Hb_000441_230

Information

Type -
Description -
Location Contig441: 296194-301837
Sequence    

Annotation

kegg
ID vvi:100251187
description uncharacterized LOC100251187
nr
ID CDP12575.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q6K5Q0
description Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1
trembl
ID M1DEP0
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037420 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42651: 296139-297126 , PASA_asmbl_42652: 300875-301658
cDNA
(Sanger)
(ID:Location)		 002_O06.ab1: 296332-297124

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_230 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000329_540 0.0928706145 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
3 Hb_003540_140 0.100565662 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
4 Hb_002506_110 0.1171795768 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
5 Hb_003226_170 0.1217674224 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
6 Hb_005271_030 0.1256885744 - - copper-transporting atpase p-type, putative [Ricinus communis]
7 Hb_000580_060 0.1283835561 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
8 Hb_000156_030 0.1313578125 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003360_020 0.1317830535 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
10 Hb_000856_100 0.1365037021 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
11 Hb_000033_060 0.1409309472 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
12 Hb_000175_530 0.1416907722 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
13 Hb_000454_030 0.1426167181 - - -
14 Hb_098315_100 0.143978085 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
15 Hb_002837_070 0.1479100264 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
16 Hb_061256_030 0.1483314426 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
17 Hb_000056_120 0.1490882598 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
18 Hb_000466_060 0.1508905344 - - phosphofructokinase [Hevea brasiliensis]
19 Hb_000365_350 0.1511793707 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
20 Hb_009193_130 0.1514814214 - - hypothetical protein RCOM_1620550 [Ricinus communis]

Gene co-expression network

sample Hb_000441_230 Hb_000441_230 Hb_000329_540 Hb_000329_540 Hb_000441_230--Hb_000329_540 Hb_003540_140 Hb_003540_140 Hb_000441_230--Hb_003540_140 Hb_002506_110 Hb_002506_110 Hb_000441_230--Hb_002506_110 Hb_003226_170 Hb_003226_170 Hb_000441_230--Hb_003226_170 Hb_005271_030 Hb_005271_030 Hb_000441_230--Hb_005271_030 Hb_000580_060 Hb_000580_060 Hb_000441_230--Hb_000580_060 Hb_000329_540--Hb_003540_140 Hb_000156_030 Hb_000156_030 Hb_000329_540--Hb_000156_030 Hb_005568_070 Hb_005568_070 Hb_000329_540--Hb_005568_070 Hb_000175_530 Hb_000175_530 Hb_000329_540--Hb_000175_530 Hb_000329_540--Hb_000580_060 Hb_002769_040 Hb_002769_040 Hb_003540_140--Hb_002769_040 Hb_003540_140--Hb_000156_030 Hb_061256_030 Hb_061256_030 Hb_003540_140--Hb_061256_030 Hb_003540_140--Hb_003226_170 Hb_000376_150 Hb_000376_150 Hb_002506_110--Hb_000376_150 Hb_009193_130 Hb_009193_130 Hb_002506_110--Hb_009193_130 Hb_098315_100 Hb_098315_100 Hb_002506_110--Hb_098315_100 Hb_002506_110--Hb_005271_030 Hb_000856_100 Hb_000856_100 Hb_002506_110--Hb_000856_100 Hb_007158_030 Hb_007158_030 Hb_002506_110--Hb_007158_030 Hb_003226_170--Hb_061256_030 Hb_003673_020 Hb_003673_020 Hb_003226_170--Hb_003673_020 Hb_002837_070 Hb_002837_070 Hb_003226_170--Hb_002837_070 Hb_001846_080 Hb_001846_080 Hb_003226_170--Hb_001846_080 Hb_174865_050 Hb_174865_050 Hb_003226_170--Hb_174865_050 Hb_005016_150 Hb_005016_150 Hb_003226_170--Hb_005016_150 Hb_029464_010 Hb_029464_010 Hb_005271_030--Hb_029464_010 Hb_005271_030--Hb_009193_130 Hb_001146_070 Hb_001146_070 Hb_005271_030--Hb_001146_070 Hb_005271_030--Hb_007158_030 Hb_001017_100 Hb_001017_100 Hb_005271_030--Hb_001017_100 Hb_010290_020 Hb_010290_020 Hb_000580_060--Hb_010290_020 Hb_004307_040 Hb_004307_040 Hb_000580_060--Hb_004307_040 Hb_000454_030 Hb_000454_030 Hb_000580_060--Hb_000454_030 Hb_003360_020 Hb_003360_020 Hb_000580_060--Hb_003360_020 Hb_000580_060--Hb_005568_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
633.312 27.7855 16.6421 51.0966 468.239 647.684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
151.323 47.5143 45.0619 29.6645 3.68409

CAGE analysis