Hb_000442_030

Information

Type -
Description -
Location Contig442: 54189-56220
Sequence    

Annotation

kegg
ID rcu:RCOM_0687710
description hypothetical protein
nr
ID XP_002520802.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S483
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0687710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42692: 54711-55001 , PASA_asmbl_42693: 55053-55772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000442_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000849_040 0.0583000195 - - transcription factor, putative [Ricinus communis]
3 Hb_006787_040 0.0829129052 - - polyadenylate-binding protein, putative [Ricinus communis]
4 Hb_024505_040 0.1000693788 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
5 Hb_000387_080 0.1006701868 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
6 Hb_000563_540 0.1022858288 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
7 Hb_001017_090 0.1024265712 - - -
8 Hb_000264_190 0.1029375182 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
9 Hb_002301_020 0.1031962946 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
10 Hb_005245_090 0.1035209109 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
11 Hb_027751_020 0.1078165303 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
12 Hb_010931_100 0.1123163445 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
13 Hb_000304_020 0.1130306655 - - beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]
14 Hb_006831_010 0.1144295989 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_002890_220 0.1155200729 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
16 Hb_009510_030 0.1165524628 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
17 Hb_001606_070 0.1194405137 - - fimbrin, putative [Ricinus communis]
18 Hb_002609_260 0.1195195678 - - CCCH-type zinc finger protein [Hevea brasiliensis]
19 Hb_114684_020 0.1207205808 - - beta-1,3-glucanase [Hevea brasiliensis]
20 Hb_000787_070 0.1212758362 - - Early nodulin 55-2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000442_030 Hb_000442_030 Hb_000849_040 Hb_000849_040 Hb_000442_030--Hb_000849_040 Hb_006787_040 Hb_006787_040 Hb_000442_030--Hb_006787_040 Hb_024505_040 Hb_024505_040 Hb_000442_030--Hb_024505_040 Hb_000387_080 Hb_000387_080 Hb_000442_030--Hb_000387_080 Hb_000563_540 Hb_000563_540 Hb_000442_030--Hb_000563_540 Hb_001017_090 Hb_001017_090 Hb_000442_030--Hb_001017_090 Hb_000849_040--Hb_006787_040 Hb_000304_020 Hb_000304_020 Hb_000849_040--Hb_000304_020 Hb_000849_040--Hb_024505_040 Hb_001606_070 Hb_001606_070 Hb_000849_040--Hb_001606_070 Hb_000849_040--Hb_000387_080 Hb_000193_230 Hb_000193_230 Hb_006787_040--Hb_000193_230 Hb_006787_040--Hb_000387_080 Hb_001366_220 Hb_001366_220 Hb_006787_040--Hb_001366_220 Hb_001191_100 Hb_001191_100 Hb_006787_040--Hb_001191_100 Hb_001514_180 Hb_001514_180 Hb_024505_040--Hb_001514_180 Hb_000787_070 Hb_000787_070 Hb_024505_040--Hb_000787_070 Hb_005016_130 Hb_005016_130 Hb_024505_040--Hb_005016_130 Hb_000041_070 Hb_000041_070 Hb_024505_040--Hb_000041_070 Hb_003057_120 Hb_003057_120 Hb_000387_080--Hb_003057_120 Hb_000387_080--Hb_001366_220 Hb_000057_060 Hb_000057_060 Hb_000387_080--Hb_000057_060 Hb_010174_120 Hb_010174_120 Hb_000387_080--Hb_010174_120 Hb_011174_070 Hb_011174_070 Hb_000387_080--Hb_011174_070 Hb_006602_020 Hb_006602_020 Hb_000387_080--Hb_006602_020 Hb_000264_190 Hb_000264_190 Hb_000563_540--Hb_000264_190 Hb_010931_100 Hb_010931_100 Hb_000563_540--Hb_010931_100 Hb_027751_020 Hb_027751_020 Hb_000563_540--Hb_027751_020 Hb_002609_260 Hb_002609_260 Hb_000563_540--Hb_002609_260 Hb_005730_020 Hb_005730_020 Hb_000563_540--Hb_005730_020 Hb_000571_070 Hb_000571_070 Hb_000563_540--Hb_000571_070 Hb_002506_010 Hb_002506_010 Hb_001017_090--Hb_002506_010 Hb_001476_100 Hb_001476_100 Hb_001017_090--Hb_001476_100 Hb_009510_030 Hb_009510_030 Hb_001017_090--Hb_009510_030 Hb_001017_090--Hb_010931_100 Hb_001017_090--Hb_000264_190 Hb_000258_430 Hb_000258_430 Hb_001017_090--Hb_000258_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.209 2.52461 0.649698 9.43297 106.226 157.776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
170.71 82.0579 150.62 18.6665 2.36187

CAGE analysis