Hb_000442_080

Information

Type -
Description -
Location Contig442: 97998-110591
Sequence    

Annotation

kegg
ID rcu:RCOM_0688100
description hypothetical protein
nr
ID KDP21702.1
description hypothetical protein JCGZ_03373 [Jatropha curcas]
swissprot
ID Q9FZD4
description Putative pentatricopeptide repeat-containing protein At1g26500 OS=Arabidopsis thaliana GN=At1g26500 PE=3 SV=1
trembl
ID A0A067JD32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03373 PE=4 SV=1
Gene Ontology
ID GO:0015299
description pentatricopeptide repeat-containing protein at1g26500

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42698: 99014-99208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000442_080 0.0 - - hypothetical protein JCGZ_03373 [Jatropha curcas]
2 Hb_000832_020 0.1055501492 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
3 Hb_000011_330 0.1094184113 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
4 Hb_002217_300 0.1102954769 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
5 Hb_001266_060 0.1172525265 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
6 Hb_002205_190 0.1208615497 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
7 Hb_073452_010 0.1214739067 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_000335_020 0.1223884673 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000567_380 0.1249492222 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
10 Hb_046198_010 0.1258887482 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
11 Hb_004452_010 0.1284071103 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
12 Hb_001085_060 0.1295046008 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
13 Hb_002496_040 0.1314986536 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
14 Hb_015175_020 0.1329094875 - - hypothetical protein JCGZ_14452 [Jatropha curcas]
15 Hb_008695_140 0.1339240577 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
16 Hb_000707_050 0.1349415629 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
17 Hb_002942_100 0.1357338739 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
18 Hb_001956_200 0.1357610026 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
19 Hb_000244_160 0.1362919111 - - PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Jatropha curcas]
20 Hb_000432_060 0.1363233663 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000442_080 Hb_000442_080 Hb_000832_020 Hb_000832_020 Hb_000442_080--Hb_000832_020 Hb_000011_330 Hb_000011_330 Hb_000442_080--Hb_000011_330 Hb_002217_300 Hb_002217_300 Hb_000442_080--Hb_002217_300 Hb_001266_060 Hb_001266_060 Hb_000442_080--Hb_001266_060 Hb_002205_190 Hb_002205_190 Hb_000442_080--Hb_002205_190 Hb_073452_010 Hb_073452_010 Hb_000442_080--Hb_073452_010 Hb_000832_020--Hb_002217_300 Hb_000032_100 Hb_000032_100 Hb_000832_020--Hb_000032_100 Hb_000707_050 Hb_000707_050 Hb_000832_020--Hb_000707_050 Hb_000739_310 Hb_000739_310 Hb_000832_020--Hb_000739_310 Hb_002311_040 Hb_002311_040 Hb_000832_020--Hb_002311_040 Hb_000796_220 Hb_000796_220 Hb_000832_020--Hb_000796_220 Hb_000567_380 Hb_000567_380 Hb_000011_330--Hb_000567_380 Hb_000011_330--Hb_002205_190 Hb_003976_030 Hb_003976_030 Hb_000011_330--Hb_003976_030 Hb_000092_010 Hb_000092_010 Hb_000011_330--Hb_000092_010 Hb_000723_130 Hb_000723_130 Hb_000011_330--Hb_000723_130 Hb_046198_010 Hb_046198_010 Hb_000011_330--Hb_046198_010 Hb_089032_040 Hb_089032_040 Hb_002217_300--Hb_089032_040 Hb_000898_040 Hb_000898_040 Hb_002217_300--Hb_000898_040 Hb_000185_040 Hb_000185_040 Hb_002217_300--Hb_000185_040 Hb_005490_030 Hb_005490_030 Hb_002217_300--Hb_005490_030 Hb_002740_180 Hb_002740_180 Hb_002217_300--Hb_002740_180 Hb_001226_020 Hb_001226_020 Hb_001266_060--Hb_001226_020 Hb_001956_200 Hb_001956_200 Hb_001266_060--Hb_001956_200 Hb_004452_010 Hb_004452_010 Hb_001266_060--Hb_004452_010 Hb_000427_050 Hb_000427_050 Hb_001266_060--Hb_000427_050 Hb_031042_020 Hb_031042_020 Hb_001266_060--Hb_031042_020 Hb_003687_100 Hb_003687_100 Hb_001266_060--Hb_003687_100 Hb_002205_190--Hb_000567_380 Hb_004785_140 Hb_004785_140 Hb_002205_190--Hb_004785_140 Hb_002205_190--Hb_003976_030 Hb_008695_140 Hb_008695_140 Hb_002205_190--Hb_008695_140 Hb_002496_040 Hb_002496_040 Hb_002205_190--Hb_002496_040 Hb_073452_010--Hb_000011_330 Hb_000251_090 Hb_000251_090 Hb_073452_010--Hb_000251_090 Hb_073452_010--Hb_002205_190 Hb_073452_010--Hb_008695_140 Hb_073452_010--Hb_000567_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.443802 0.512542 0.229637 0.432074 0.776301 1.02028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.30311 0.572531 1.92515 0.835629 0.565551

CAGE analysis