Hb_000442_150

Information

Type -
Description -
Location Contig442: 133864-135501
Sequence    

Annotation

kegg
ID rcu:RCOM_0688680
description hypothetical protein
nr
ID XP_012091206.1
description PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03366 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42710: 133720-136300 , PASA_asmbl_42711: 133720-136300
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000442_150 0.0 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
2 Hb_008246_040 0.0645999298 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
3 Hb_002671_140 0.079429008 - - calcium-dependent protein kinase [Hevea brasiliensis]
4 Hb_000982_060 0.0794297647 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
5 Hb_057878_010 0.0800569892 - - hypothetical protein VITISV_036304 [Vitis vinifera]
6 Hb_001135_130 0.0834572522 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
7 Hb_003893_030 0.0845428336 - - Protein yrdA, putative [Ricinus communis]
8 Hb_000915_020 0.084573763 - - unnamed protein product [Vitis vinifera]
9 Hb_000521_320 0.088411359 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
10 Hb_014497_050 0.0895871276 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
11 Hb_002876_320 0.0921927954 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
12 Hb_008120_030 0.094820935 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
13 Hb_002078_020 0.0954257567 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
14 Hb_002950_100 0.0960510078 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
15 Hb_000683_070 0.0960764516 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
16 Hb_000661_290 0.0974443467 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
17 Hb_000077_140 0.0982779148 - - structural constituent of cell wall, putative [Ricinus communis]
18 Hb_000630_050 0.09837393 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002542_020 0.0993291531 - - PREDICTED: uncharacterized protein LOC105634003 isoform X1 [Jatropha curcas]
20 Hb_000618_040 0.0996760109 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]

Gene co-expression network

sample Hb_000442_150 Hb_000442_150 Hb_008246_040 Hb_008246_040 Hb_000442_150--Hb_008246_040 Hb_002671_140 Hb_002671_140 Hb_000442_150--Hb_002671_140 Hb_000982_060 Hb_000982_060 Hb_000442_150--Hb_000982_060 Hb_057878_010 Hb_057878_010 Hb_000442_150--Hb_057878_010 Hb_001135_130 Hb_001135_130 Hb_000442_150--Hb_001135_130 Hb_003893_030 Hb_003893_030 Hb_000442_150--Hb_003893_030 Hb_000915_020 Hb_000915_020 Hb_008246_040--Hb_000915_020 Hb_000020_190 Hb_000020_190 Hb_008246_040--Hb_000020_190 Hb_014497_050 Hb_014497_050 Hb_008246_040--Hb_014497_050 Hb_008246_040--Hb_002671_140 Hb_000185_070 Hb_000185_070 Hb_008246_040--Hb_000185_070 Hb_000562_090 Hb_000562_090 Hb_002671_140--Hb_000562_090 Hb_003609_030 Hb_003609_030 Hb_002671_140--Hb_003609_030 Hb_000661_290 Hb_000661_290 Hb_002671_140--Hb_000661_290 Hb_002671_140--Hb_057878_010 Hb_135831_010 Hb_135831_010 Hb_000982_060--Hb_135831_010 Hb_000000_270 Hb_000000_270 Hb_000982_060--Hb_000000_270 Hb_000982_060--Hb_003893_030 Hb_000982_060--Hb_001135_130 Hb_000683_070 Hb_000683_070 Hb_000982_060--Hb_000683_070 Hb_002400_470 Hb_002400_470 Hb_057878_010--Hb_002400_470 Hb_002078_020 Hb_002078_020 Hb_057878_010--Hb_002078_020 Hb_011310_210 Hb_011310_210 Hb_057878_010--Hb_011310_210 Hb_000236_380 Hb_000236_380 Hb_057878_010--Hb_000236_380 Hb_004310_020 Hb_004310_020 Hb_001135_130--Hb_004310_020 Hb_000205_300 Hb_000205_300 Hb_001135_130--Hb_000205_300 Hb_002235_210 Hb_002235_210 Hb_001135_130--Hb_002235_210 Hb_001135_130--Hb_057878_010 Hb_003893_030--Hb_002235_210 Hb_005271_220 Hb_005271_220 Hb_003893_030--Hb_005271_220 Hb_002311_180 Hb_002311_180 Hb_003893_030--Hb_002311_180 Hb_000521_320 Hb_000521_320 Hb_003893_030--Hb_000521_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.1131 20.2085 19.1819 25.7548 18.8895 23.6095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.7366 14.5742 22.9471 12.9148 9.70132

CAGE analysis