Hb_000442_160

Information

Type -
Description -
Location Contig442: 137680-142270
Sequence    

Annotation

kegg
ID rcu:RCOM_0688690
description alpha-soluble nsf attachment protein, putative
nr
ID XP_002520820.1
description alpha-soluble nsf attachment protein, putative [Ricinus communis]
swissprot
ID P93798
description Alpha-soluble NSF attachment protein OS=Vitis vinifera PE=2 SV=1
trembl
ID B9S4A1
description Alpha-soluble nsf attachment protein, putative OS=Ricinus communis GN=RCOM_0688690 PE=4 SV=1
Gene Ontology
ID GO:0005622
description alpha-soluble nsf attachment protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42712: 137422-141984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000442_160 0.0 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
2 Hb_006447_010 0.069828663 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
3 Hb_000365_360 0.0818650448 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
4 Hb_000749_150 0.0835025393 - - -
5 Hb_133271_020 0.0842499217 - - prohibitin, putative [Ricinus communis]
6 Hb_001246_100 0.0845090285 - - Ras-related small GTP-binding family protein [Theobroma cacao]
7 Hb_010608_010 0.0847227062 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
8 Hb_001840_080 0.085464754 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
9 Hb_000175_070 0.0880869005 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
10 Hb_000510_090 0.0910364597 - - 40S ribosomal protein S15 [Morus notabilis]
11 Hb_003638_140 0.0930235542 - - protein binding protein, putative [Ricinus communis]
12 Hb_000317_430 0.0940286227 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
13 Hb_001369_060 0.0947489161 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
14 Hb_000103_140 0.09537179 - - ribosomal protein S3a [Populus trichocarpa]
15 Hb_000671_100 0.0955391856 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
16 Hb_034585_030 0.0964578791 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
17 Hb_003777_270 0.0969735059 - - 60S ribosomal protein L3B [Hevea brasiliensis]
18 Hb_001804_060 0.0969843773 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
19 Hb_134226_010 0.0976648025 - - 40S ribosomal protein S21e, putative [Ricinus communis]
20 Hb_004724_100 0.0977707393 - - 60S ribosomal protein L10aA [Hevea brasiliensis]

Gene co-expression network

sample Hb_000442_160 Hb_000442_160 Hb_006447_010 Hb_006447_010 Hb_000442_160--Hb_006447_010 Hb_000365_360 Hb_000365_360 Hb_000442_160--Hb_000365_360 Hb_000749_150 Hb_000749_150 Hb_000442_160--Hb_000749_150 Hb_133271_020 Hb_133271_020 Hb_000442_160--Hb_133271_020 Hb_001246_100 Hb_001246_100 Hb_000442_160--Hb_001246_100 Hb_010608_010 Hb_010608_010 Hb_000442_160--Hb_010608_010 Hb_006447_010--Hb_001246_100 Hb_001243_050 Hb_001243_050 Hb_006447_010--Hb_001243_050 Hb_001030_120 Hb_001030_120 Hb_006447_010--Hb_001030_120 Hb_006447_010--Hb_133271_020 Hb_012340_030 Hb_012340_030 Hb_006447_010--Hb_012340_030 Hb_098709_010 Hb_098709_010 Hb_000365_360--Hb_098709_010 Hb_000317_430 Hb_000317_430 Hb_000365_360--Hb_000317_430 Hb_001369_060 Hb_001369_060 Hb_000365_360--Hb_001369_060 Hb_002014_080 Hb_002014_080 Hb_000365_360--Hb_002014_080 Hb_000035_380 Hb_000035_380 Hb_000365_360--Hb_000035_380 Hb_118419_020 Hb_118419_020 Hb_000365_360--Hb_118419_020 Hb_004204_200 Hb_004204_200 Hb_000749_150--Hb_004204_200 Hb_000749_150--Hb_010608_010 Hb_000803_150 Hb_000803_150 Hb_000749_150--Hb_000803_150 Hb_000165_030 Hb_000165_030 Hb_000749_150--Hb_000165_030 Hb_000204_040 Hb_000204_040 Hb_000749_150--Hb_000204_040 Hb_000120_500 Hb_000120_500 Hb_000749_150--Hb_000120_500 Hb_158092_070 Hb_158092_070 Hb_133271_020--Hb_158092_070 Hb_004662_030 Hb_004662_030 Hb_133271_020--Hb_004662_030 Hb_000975_290 Hb_000975_290 Hb_133271_020--Hb_000975_290 Hb_133271_020--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_133271_020--Hb_002686_270 Hb_004223_130 Hb_004223_130 Hb_133271_020--Hb_004223_130 Hb_001454_140 Hb_001454_140 Hb_001246_100--Hb_001454_140 Hb_007193_100 Hb_007193_100 Hb_001246_100--Hb_007193_100 Hb_000386_040 Hb_000386_040 Hb_001246_100--Hb_000386_040 Hb_000175_070 Hb_000175_070 Hb_001246_100--Hb_000175_070 Hb_143813_010 Hb_143813_010 Hb_001246_100--Hb_143813_010 Hb_028639_060 Hb_028639_060 Hb_010608_010--Hb_028639_060 Hb_003642_060 Hb_003642_060 Hb_010608_010--Hb_003642_060 Hb_001214_130 Hb_001214_130 Hb_010608_010--Hb_001214_130 Hb_033642_010 Hb_033642_010 Hb_010608_010--Hb_033642_010 Hb_000905_190 Hb_000905_190 Hb_010608_010--Hb_000905_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
461.93 92.0111 97.9408 95.8252 336.937 773.083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
434.947 374.968 350.424 150.227 39.4419

CAGE analysis