Hb_000442_170

Information

Type -
Description -
Location Contig442: 143170-149903
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42713: 143553-144698 , PASA_asmbl_42714: 144816-145006 , PASA_asmbl_42715: 145550-145818 , PASA_asmbl_42716: 146348-146594 , PASA_asmbl_42717: 143554-146760 , PASA_asmbl_42718: 146959-147066
cDNA
(Sanger)
(ID:Location)		 023_O20.ab1: 143560-144476 , 031_A14.ab1: 143553-144486

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000442_170 0.0 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_001301_010 0.1067287207 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_000776_020 0.1068979415 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
4 Hb_001963_110 0.1194743033 - - -
5 Hb_003992_220 0.1320809586 - - s-receptor kinase, putative [Ricinus communis]
6 Hb_006594_080 0.1348705265 - - beta-glucosidase, putative [Ricinus communis]
7 Hb_000191_100 0.1357264384 - - cytochrome P450, putative [Ricinus communis]
8 Hb_002308_060 0.1385606573 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
9 Hb_002888_060 0.1443828295 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
10 Hb_031862_200 0.1466871629 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
11 Hb_001514_150 0.1473878898 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
12 Hb_017225_030 0.1483637087 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
13 Hb_007035_010 0.1506324752 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
14 Hb_010490_060 0.1509368687 - - PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
15 Hb_001141_040 0.1511388664 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
16 Hb_000594_130 0.1545303887 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_001866_100 0.155196416 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
18 Hb_000640_330 0.1554306809 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007205_020 0.1555156087 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
20 Hb_001109_130 0.1559571371 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000442_170 Hb_000442_170 Hb_001301_010 Hb_001301_010 Hb_000442_170--Hb_001301_010 Hb_000776_020 Hb_000776_020 Hb_000442_170--Hb_000776_020 Hb_001963_110 Hb_001963_110 Hb_000442_170--Hb_001963_110 Hb_003992_220 Hb_003992_220 Hb_000442_170--Hb_003992_220 Hb_006594_080 Hb_006594_080 Hb_000442_170--Hb_006594_080 Hb_000191_100 Hb_000191_100 Hb_000442_170--Hb_000191_100 Hb_001301_010--Hb_000776_020 Hb_000416_010 Hb_000416_010 Hb_001301_010--Hb_000416_010 Hb_002845_020 Hb_002845_020 Hb_001301_010--Hb_002845_020 Hb_001866_100 Hb_001866_100 Hb_001301_010--Hb_001866_100 Hb_007205_020 Hb_007205_020 Hb_001301_010--Hb_007205_020 Hb_007850_110 Hb_007850_110 Hb_000776_020--Hb_007850_110 Hb_000776_020--Hb_000416_010 Hb_017098_050 Hb_017098_050 Hb_000776_020--Hb_017098_050 Hb_001109_130 Hb_001109_130 Hb_000776_020--Hb_001109_130 Hb_002308_060 Hb_002308_060 Hb_001963_110--Hb_002308_060 Hb_001963_110--Hb_003992_220 Hb_001677_230 Hb_001677_230 Hb_001963_110--Hb_001677_230 Hb_001963_110--Hb_000776_020 Hb_002888_060 Hb_002888_060 Hb_001963_110--Hb_002888_060 Hb_170878_060 Hb_170878_060 Hb_003992_220--Hb_170878_060 Hb_167211_010 Hb_167211_010 Hb_003992_220--Hb_167211_010 Hb_001778_040 Hb_001778_040 Hb_003992_220--Hb_001778_040 Hb_003992_220--Hb_002308_060 Hb_003992_220--Hb_001109_130 Hb_005332_050 Hb_005332_050 Hb_006594_080--Hb_005332_050 Hb_006594_080--Hb_003992_220 Hb_006594_080--Hb_167211_010 Hb_000313_230 Hb_000313_230 Hb_006594_080--Hb_000313_230 Hb_005288_060 Hb_005288_060 Hb_006594_080--Hb_005288_060 Hb_016637_020 Hb_016637_020 Hb_000191_100--Hb_016637_020 Hb_031862_200 Hb_031862_200 Hb_000191_100--Hb_031862_200 Hb_001819_010 Hb_001819_010 Hb_000191_100--Hb_001819_010 Hb_029866_110 Hb_029866_110 Hb_000191_100--Hb_029866_110 Hb_000191_100--Hb_007205_020 Hb_123560_050 Hb_123560_050 Hb_000191_100--Hb_123560_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0177323 4.36494 3.65241 3.8221 0.0222435 0.13107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0719229 0.11319 0.539273 8.83896 15.122

CAGE analysis