Hb_000444_030

Information

Type -
Description -
Location Contig444: 65717-67068
Sequence    

Annotation

kegg
ID cic:CICLE_v10029135mg
description hypothetical protein
nr
ID XP_012075288.1
description PREDICTED: expansin-A20 [Jatropha curcas]
swissprot
ID Q9SZM1
description Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1
trembl
ID A0A067LHZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10755 PE=3 SV=1
Gene Ontology
ID GO:0005576
description alpha-expansin 20 precursor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42754: 65763-66984
cDNA
(Sanger)
(ID:Location)		 006_K20.ab1: 66641-66981

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000444_030 0.0 - - PREDICTED: expansin-A20 [Jatropha curcas]
2 Hb_001741_080 0.0868264023 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
3 Hb_000184_180 0.0898334992 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
4 Hb_001514_180 0.094060761 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
5 Hb_006816_440 0.1004224991 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_000041_070 0.1167952256 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
7 Hb_043061_010 0.121950068 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
8 Hb_060668_010 0.1230467952 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
9 Hb_000603_210 0.1257342999 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
10 Hb_002235_230 0.1259888953 - - latex abundant protein 1 [Hevea brasiliensis]
11 Hb_111648_010 0.1261120092 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
12 Hb_115919_020 0.1284184934 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
13 Hb_005016_130 0.1305583349 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
14 Hb_149683_010 0.132052606 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
15 Hb_024505_040 0.1379129326 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
16 Hb_000284_010 0.1394180316 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
17 Hb_000052_010 0.1395337444 - - hypothetical protein M569_08416, partial [Genlisea aurea]
18 Hb_000580_170 0.1445196245 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
19 Hb_003540_230 0.1465584647 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
20 Hb_000078_030 0.1485504218 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000444_030 Hb_000444_030 Hb_001741_080 Hb_001741_080 Hb_000444_030--Hb_001741_080 Hb_000184_180 Hb_000184_180 Hb_000444_030--Hb_000184_180 Hb_001514_180 Hb_001514_180 Hb_000444_030--Hb_001514_180 Hb_006816_440 Hb_006816_440 Hb_000444_030--Hb_006816_440 Hb_000041_070 Hb_000041_070 Hb_000444_030--Hb_000041_070 Hb_043061_010 Hb_043061_010 Hb_000444_030--Hb_043061_010 Hb_060668_010 Hb_060668_010 Hb_001741_080--Hb_060668_010 Hb_005016_130 Hb_005016_130 Hb_001741_080--Hb_005016_130 Hb_001741_080--Hb_000041_070 Hb_000078_030 Hb_000078_030 Hb_001741_080--Hb_000078_030 Hb_012799_060 Hb_012799_060 Hb_001741_080--Hb_012799_060 Hb_000184_180--Hb_006816_440 Hb_000052_010 Hb_000052_010 Hb_000184_180--Hb_000052_010 Hb_000184_180--Hb_001741_080 Hb_115919_020 Hb_115919_020 Hb_000184_180--Hb_115919_020 Hb_007747_130 Hb_007747_130 Hb_000184_180--Hb_007747_130 Hb_024505_040 Hb_024505_040 Hb_001514_180--Hb_024505_040 Hb_001514_180--Hb_000041_070 Hb_001514_180--Hb_001741_080 Hb_111648_010 Hb_111648_010 Hb_001514_180--Hb_111648_010 Hb_001514_180--Hb_060668_010 Hb_149683_010 Hb_149683_010 Hb_006816_440--Hb_149683_010 Hb_002235_230 Hb_002235_230 Hb_006816_440--Hb_002235_230 Hb_006816_440--Hb_001741_080 Hb_006816_440--Hb_000052_010 Hb_004206_030 Hb_004206_030 Hb_000041_070--Hb_004206_030 Hb_000041_070--Hb_060668_010 Hb_002387_060 Hb_002387_060 Hb_000041_070--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_000041_070--Hb_002685_090 Hb_043061_010--Hb_115919_020 Hb_001892_150 Hb_001892_150 Hb_043061_010--Hb_001892_150 Hb_000284_010 Hb_000284_010 Hb_043061_010--Hb_000284_010 Hb_134789_010 Hb_134789_010 Hb_043061_010--Hb_134789_010 Hb_043061_010--Hb_000184_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
298.224 2.18258 1.18234 8.65606 158.66 427.978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
831.071 540.799 407.274 16.1642 2.47608

CAGE analysis