Hb_000444_050

Information

Type transcription factor
Description TF Family: HMG
Location Contig444: 83560-91760
Sequence    

Annotation

kegg
ID vvi:100263780
description uncharacterized LOC100263780
nr
ID XP_012089920.1
description PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
swissprot
ID Q84K34
description E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1
trembl
ID A0A067JFP8
description E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_02504 PE=3 SV=1
Gene Ontology
ID GO:0005634
description ring u-box and traf-like domains

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42755: 85135-92054 , PASA_asmbl_42756: 83691-92054 , PASA_asmbl_42757: 85634-92054
cDNA
(Sanger)
(ID:Location)		 015_H14.ab1: 86924-92054

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000444_050 0.0 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
2 Hb_000087_020 0.0574524582 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
3 Hb_000205_270 0.0658177478 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
4 Hb_000086_070 0.0660948362 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
5 Hb_005997_010 0.0665101448 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
6 Hb_023732_070 0.0696334568 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
7 Hb_000329_310 0.07044601 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
8 Hb_001691_210 0.0750619623 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
9 Hb_000024_080 0.0751123217 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
10 Hb_018133_060 0.0755863006 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
11 Hb_003927_130 0.0758610418 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
12 Hb_000465_060 0.0773298931 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
13 Hb_000613_140 0.0778748782 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
14 Hb_001829_060 0.0782037767 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
15 Hb_001109_020 0.0784022995 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001383_060 0.0785554752 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
17 Hb_011794_070 0.0791233074 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
18 Hb_009666_040 0.0795874779 - - glutathione transferase, putative [Ricinus communis]
19 Hb_000274_020 0.0798283915 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
20 Hb_003020_230 0.0821810409 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]

Gene co-expression network

sample Hb_000444_050 Hb_000444_050 Hb_000087_020 Hb_000087_020 Hb_000444_050--Hb_000087_020 Hb_000205_270 Hb_000205_270 Hb_000444_050--Hb_000205_270 Hb_000086_070 Hb_000086_070 Hb_000444_050--Hb_000086_070 Hb_005997_010 Hb_005997_010 Hb_000444_050--Hb_005997_010 Hb_023732_070 Hb_023732_070 Hb_000444_050--Hb_023732_070 Hb_000329_310 Hb_000329_310 Hb_000444_050--Hb_000329_310 Hb_000024_080 Hb_000024_080 Hb_000087_020--Hb_000024_080 Hb_005398_030 Hb_005398_030 Hb_000087_020--Hb_005398_030 Hb_004032_100 Hb_004032_100 Hb_000087_020--Hb_004032_100 Hb_000087_020--Hb_005997_010 Hb_000751_130 Hb_000751_130 Hb_000087_020--Hb_000751_130 Hb_016065_010 Hb_016065_010 Hb_000205_270--Hb_016065_010 Hb_000009_160 Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_001109_020 Hb_001109_020 Hb_000205_270--Hb_001109_020 Hb_005488_010 Hb_005488_010 Hb_000205_270--Hb_005488_010 Hb_000205_270--Hb_000329_310 Hb_003927_130 Hb_003927_130 Hb_000086_070--Hb_003927_130 Hb_001829_060 Hb_001829_060 Hb_000086_070--Hb_001829_060 Hb_000086_070--Hb_001109_020 Hb_000883_050 Hb_000883_050 Hb_000086_070--Hb_000883_050 Hb_001383_060 Hb_001383_060 Hb_000086_070--Hb_001383_060 Hb_003020_230 Hb_003020_230 Hb_005997_010--Hb_003020_230 Hb_004837_140 Hb_004837_140 Hb_005997_010--Hb_004837_140 Hb_009954_040 Hb_009954_040 Hb_005997_010--Hb_009954_040 Hb_001824_070 Hb_001824_070 Hb_005997_010--Hb_001824_070 Hb_000371_080 Hb_000371_080 Hb_005997_010--Hb_000371_080 Hb_000465_060 Hb_000465_060 Hb_023732_070--Hb_000465_060 Hb_000970_010 Hb_000970_010 Hb_023732_070--Hb_000970_010 Hb_023732_070--Hb_001824_070 Hb_023732_070--Hb_000371_080 Hb_001584_070 Hb_001584_070 Hb_023732_070--Hb_001584_070 Hb_000329_310--Hb_001829_060 Hb_000329_310--Hb_001109_020 Hb_003455_040 Hb_003455_040 Hb_000329_310--Hb_003455_040 Hb_000329_310--Hb_003927_130 Hb_000170_010 Hb_000170_010 Hb_000329_310--Hb_000170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2949 8.05217 9.07445 11.0668 15.9651 37.9216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.9305 48.5767 34.2361 15.9084 8.21934

CAGE analysis