Hb_000444_090

Information

Type -
Description -
Location Contig444: 247328-248242
Sequence    

Annotation

kegg
ID rcu:RCOM_1028690
description hypothetical protein
nr
ID XP_002526403.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9T0F7
description Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana GN=GXM2 PE=1 SV=1
trembl
ID B9SK84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1028690 PE=4 SV=1
Gene Ontology
ID GO:0008168
description glucuronoxylan 4-o-methyltransferase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000444_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_174541_020 0.1157074339 - - PREDICTED: cysteine proteinase inhibitor 6-like [Populus euphratica]
3 Hb_007943_100 0.1243709789 - - unnamed protein product [Coffea canephora]
4 Hb_073171_110 0.1244793476 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
5 Hb_011316_110 0.1246840939 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
6 Hb_000997_210 0.1259409649 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
7 Hb_002299_060 0.1294441084 transcription factor TF Family: FAR1 PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
8 Hb_000236_250 0.1355745156 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007304_110 0.1370935228 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
10 Hb_000169_090 0.1378118039 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
11 Hb_003030_020 0.1378267128 - - PREDICTED: uncharacterized protein LOC105632544 [Jatropha curcas]
12 Hb_007545_030 0.1393732852 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001476_140 0.1401905789 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]
14 Hb_014361_100 0.1415608576 - - PREDICTED: casein kinase II subunit alpha [Cicer arietinum]
15 Hb_000723_260 0.1437403152 - - ethylene insensitive protein, putative [Ricinus communis]
16 Hb_007558_140 0.1452045659 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
17 Hb_000261_350 0.1458950345 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
18 Hb_028639_010 0.14718294 - - transporter, putative [Ricinus communis]
19 Hb_004046_020 0.1474349426 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
20 Hb_000556_080 0.1509848581 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000444_090 Hb_000444_090 Hb_174541_020 Hb_174541_020 Hb_000444_090--Hb_174541_020 Hb_007943_100 Hb_007943_100 Hb_000444_090--Hb_007943_100 Hb_073171_110 Hb_073171_110 Hb_000444_090--Hb_073171_110 Hb_011316_110 Hb_011316_110 Hb_000444_090--Hb_011316_110 Hb_000997_210 Hb_000997_210 Hb_000444_090--Hb_000997_210 Hb_002299_060 Hb_002299_060 Hb_000444_090--Hb_002299_060 Hb_001369_420 Hb_001369_420 Hb_174541_020--Hb_001369_420 Hb_002609_110 Hb_002609_110 Hb_174541_020--Hb_002609_110 Hb_008695_180 Hb_008695_180 Hb_174541_020--Hb_008695_180 Hb_003030_020 Hb_003030_020 Hb_174541_020--Hb_003030_020 Hb_000025_140 Hb_000025_140 Hb_174541_020--Hb_000025_140 Hb_001252_080 Hb_001252_080 Hb_174541_020--Hb_001252_080 Hb_000768_190 Hb_000768_190 Hb_007943_100--Hb_000768_190 Hb_028639_010 Hb_028639_010 Hb_007943_100--Hb_028639_010 Hb_003001_150 Hb_003001_150 Hb_007943_100--Hb_003001_150 Hb_000037_110 Hb_000037_110 Hb_007943_100--Hb_000037_110 Hb_002150_030 Hb_002150_030 Hb_007943_100--Hb_002150_030 Hb_000059_150 Hb_000059_150 Hb_007943_100--Hb_000059_150 Hb_012340_010 Hb_012340_010 Hb_073171_110--Hb_012340_010 Hb_073171_110--Hb_003030_020 Hb_000556_080 Hb_000556_080 Hb_073171_110--Hb_000556_080 Hb_009048_040 Hb_009048_040 Hb_073171_110--Hb_009048_040 Hb_073171_110--Hb_000997_210 Hb_012055_020 Hb_012055_020 Hb_073171_110--Hb_012055_020 Hb_007447_010 Hb_007447_010 Hb_011316_110--Hb_007447_010 Hb_001584_110 Hb_001584_110 Hb_011316_110--Hb_001584_110 Hb_002400_270 Hb_002400_270 Hb_011316_110--Hb_002400_270 Hb_000729_050 Hb_000729_050 Hb_011316_110--Hb_000729_050 Hb_022256_040 Hb_022256_040 Hb_011316_110--Hb_022256_040 Hb_000184_110 Hb_000184_110 Hb_011316_110--Hb_000184_110 Hb_007558_140 Hb_007558_140 Hb_000997_210--Hb_007558_140 Hb_153258_010 Hb_153258_010 Hb_000997_210--Hb_153258_010 Hb_098993_010 Hb_098993_010 Hb_000997_210--Hb_098993_010 Hb_002027_130 Hb_002027_130 Hb_000997_210--Hb_002027_130 Hb_000997_210--Hb_002299_060 Hb_000898_040 Hb_000898_040 Hb_002299_060--Hb_000898_040 Hb_001085_170 Hb_001085_170 Hb_002299_060--Hb_001085_170 Hb_002299_060--Hb_007558_140 Hb_002217_300 Hb_002217_300 Hb_002299_060--Hb_002217_300 Hb_089032_040 Hb_089032_040 Hb_002299_060--Hb_089032_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
218.032 58.2176 16.3492 162.045 387.243 248.698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
142.937 96.8985 291.956 88.1936 145.446

CAGE analysis