Hb_000445_080

Information

Type transcription factor
Description TF Family: MIKC
Location Contig445: 83333-85895
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20480g
description POPTRDRAFT_651468; MADS-box family protein
nr
ID XP_012078322.1
description PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]
swissprot
ID Q07474
description Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1
trembl
ID E6NU81
description JMS09K11.9 protein OS=Jatropha curcas GN=JMS09K11.9 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_080 0.0 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]
2 Hb_168343_010 0.1923302643 - - sensory transduction histidine kinase, putative [Ricinus communis]
3 Hb_001846_050 0.2120956768 - - -
4 Hb_006455_080 0.2157578491 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
5 Hb_094647_010 0.2267971487 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Jatropha curcas]
6 Hb_000878_130 0.232717657 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006198_050 0.2330222023 - - protein with unknown function [Ricinus communis]
8 Hb_000808_240 0.2339982536 - - -
9 Hb_000035_120 0.23403755 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
10 Hb_006455_110 0.2361609399 - - bromodomain-containing protein, putative [Ricinus communis]
11 Hb_004738_050 0.2368028997 - - F-box/leucine rich repeat protein, putative [Ricinus communis]
12 Hb_005965_010 0.2380007547 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
13 Hb_000117_020 0.2395935396 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
14 Hb_006455_090 0.2409460723 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
15 Hb_088065_010 0.241161947 - - hypothetical protein glysoja_007934 [Glycine soja]
16 Hb_000457_160 0.2416789022 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
17 Hb_000270_500 0.2432044042 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
18 Hb_139859_010 0.2483108447 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
19 Hb_005271_150 0.2506562133 - - PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Malus domestica]
20 Hb_002960_050 0.2527151462 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]

Gene co-expression network

sample Hb_000445_080 Hb_000445_080 Hb_168343_010 Hb_168343_010 Hb_000445_080--Hb_168343_010 Hb_001846_050 Hb_001846_050 Hb_000445_080--Hb_001846_050 Hb_006455_080 Hb_006455_080 Hb_000445_080--Hb_006455_080 Hb_094647_010 Hb_094647_010 Hb_000445_080--Hb_094647_010 Hb_000878_130 Hb_000878_130 Hb_000445_080--Hb_000878_130 Hb_006198_050 Hb_006198_050 Hb_000445_080--Hb_006198_050 Hb_012286_050 Hb_012286_050 Hb_168343_010--Hb_012286_050 Hb_006455_090 Hb_006455_090 Hb_168343_010--Hb_006455_090 Hb_168343_010--Hb_006455_080 Hb_000424_240 Hb_000424_240 Hb_168343_010--Hb_000424_240 Hb_000914_070 Hb_000914_070 Hb_168343_010--Hb_000914_070 Hb_001846_050--Hb_168343_010 Hb_015930_010 Hb_015930_010 Hb_001846_050--Hb_015930_010 Hb_001846_050--Hb_006455_080 Hb_001846_050--Hb_094647_010 Hb_004738_050 Hb_004738_050 Hb_001846_050--Hb_004738_050 Hb_006455_080--Hb_006455_090 Hb_006455_110 Hb_006455_110 Hb_006455_080--Hb_006455_110 Hb_000248_050 Hb_000248_050 Hb_006455_080--Hb_000248_050 Hb_003711_040 Hb_003711_040 Hb_006455_080--Hb_003711_040 Hb_000295_100 Hb_000295_100 Hb_006455_080--Hb_000295_100 Hb_000453_080 Hb_000453_080 Hb_006455_080--Hb_000453_080 Hb_000270_500 Hb_000270_500 Hb_094647_010--Hb_000270_500 Hb_009486_010 Hb_009486_010 Hb_094647_010--Hb_009486_010 Hb_001575_040 Hb_001575_040 Hb_094647_010--Hb_001575_040 Hb_000414_030 Hb_000414_030 Hb_094647_010--Hb_000414_030 Hb_094647_010--Hb_006455_080 Hb_094647_010--Hb_006455_110 Hb_020902_010 Hb_020902_010 Hb_000878_130--Hb_020902_010 Hb_000035_120 Hb_000035_120 Hb_000878_130--Hb_000035_120 Hb_010298_010 Hb_010298_010 Hb_000878_130--Hb_010298_010 Hb_004735_010 Hb_004735_010 Hb_000878_130--Hb_004735_010 Hb_000878_130--Hb_006455_090 Hb_003638_140 Hb_003638_140 Hb_000878_130--Hb_003638_140 Hb_006198_050--Hb_004735_010 Hb_000457_160 Hb_000457_160 Hb_006198_050--Hb_000457_160 Hb_000907_100 Hb_000907_100 Hb_006198_050--Hb_000907_100 Hb_019613_020 Hb_019613_020 Hb_006198_050--Hb_019613_020 Hb_035524_030 Hb_035524_030 Hb_006198_050--Hb_035524_030 Hb_006602_010 Hb_006602_010 Hb_006198_050--Hb_006602_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.17663 1.01913 0.239626 0.227806 0.814339 12.1257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.975265 0.418149 3.57824 0.767926 0.410014

CAGE analysis