Hb_000445_140

Information

Type -
Description -
Location Contig445: 162941-167588
Sequence    

Annotation

kegg
ID rcu:RCOM_0561550
description hypothetical protein
nr
ID XP_002520301.1
description hypothetical protein RCOM_0561550 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S2T2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0561550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42896: 164060-167992
cDNA
(Sanger)
(ID:Location)		 027_P06r.ab1: 162988-164238

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_140 0.0 - - hypothetical protein RCOM_0561550 [Ricinus communis]
2 Hb_001619_050 0.0399310517 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
3 Hb_001014_100 0.0613544854 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
4 Hb_005496_050 0.0805877212 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
5 Hb_017151_010 0.0856365669 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
6 Hb_025557_050 0.0893617269 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
7 Hb_002870_020 0.0897051071 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
8 Hb_000108_050 0.0908135624 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
9 Hb_132840_110 0.092007401 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
10 Hb_041327_020 0.0930987016 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003462_070 0.0942610046 - - arsenical pump-driving atpase, putative [Ricinus communis]
12 Hb_000640_160 0.0945064594 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
13 Hb_002150_140 0.0955837975 - - PREDICTED: girdin-like [Jatropha curcas]
14 Hb_005895_010 0.095772894 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
15 Hb_001604_120 0.0959976947 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
16 Hb_000015_100 0.0977814729 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
17 Hb_031091_020 0.0979178683 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
18 Hb_003225_020 0.098241109 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
19 Hb_008206_060 0.0984018844 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001660_120 0.0986650971 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000445_140 Hb_000445_140 Hb_001619_050 Hb_001619_050 Hb_000445_140--Hb_001619_050 Hb_001014_100 Hb_001014_100 Hb_000445_140--Hb_001014_100 Hb_005496_050 Hb_005496_050 Hb_000445_140--Hb_005496_050 Hb_017151_010 Hb_017151_010 Hb_000445_140--Hb_017151_010 Hb_025557_050 Hb_025557_050 Hb_000445_140--Hb_025557_050 Hb_002870_020 Hb_002870_020 Hb_000445_140--Hb_002870_020 Hb_000640_160 Hb_000640_160 Hb_001619_050--Hb_000640_160 Hb_001619_050--Hb_001014_100 Hb_003225_020 Hb_003225_020 Hb_001619_050--Hb_003225_020 Hb_001619_050--Hb_017151_010 Hb_001619_050--Hb_002870_020 Hb_001014_100--Hb_005496_050 Hb_000261_050 Hb_000261_050 Hb_001014_100--Hb_000261_050 Hb_132840_110 Hb_132840_110 Hb_001014_100--Hb_132840_110 Hb_002811_270 Hb_002811_270 Hb_001014_100--Hb_002811_270 Hb_006816_180 Hb_006816_180 Hb_005496_050--Hb_006816_180 Hb_041327_020 Hb_041327_020 Hb_005496_050--Hb_041327_020 Hb_005496_050--Hb_001619_050 Hb_002150_140 Hb_002150_140 Hb_005496_050--Hb_002150_140 Hb_017151_010--Hb_025557_050 Hb_053079_020 Hb_053079_020 Hb_017151_010--Hb_053079_020 Hb_001789_190 Hb_001789_190 Hb_017151_010--Hb_001789_190 Hb_000115_280 Hb_000115_280 Hb_017151_010--Hb_000115_280 Hb_032202_080 Hb_032202_080 Hb_017151_010--Hb_032202_080 Hb_025557_050--Hb_001789_190 Hb_010812_050 Hb_010812_050 Hb_025557_050--Hb_010812_050 Hb_008059_010 Hb_008059_010 Hb_025557_050--Hb_008059_010 Hb_004097_070 Hb_004097_070 Hb_025557_050--Hb_004097_070 Hb_031284_010 Hb_031284_010 Hb_025557_050--Hb_031284_010 Hb_003228_100 Hb_003228_100 Hb_002870_020--Hb_003228_100 Hb_004032_370 Hb_004032_370 Hb_002870_020--Hb_004032_370 Hb_000663_020 Hb_000663_020 Hb_002870_020--Hb_000663_020 Hb_077026_010 Hb_077026_010 Hb_002870_020--Hb_077026_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2413 8.19102 19.4288 11.6435 10.5373 11.9122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.23155 4.77693 7.40413 6.29589 19.617

CAGE analysis