Hb_000445_170

Information

Type -
Description -
Location Contig445: 193040-196600
Sequence    

Annotation

kegg
ID rcu:RCOM_0561510
description ATP binding protein, putative
nr
ID XP_012078335.1
description PREDICTED: probable methyltransferase PMT10 [Jatropha curcas]
swissprot
ID Q94KE1
description Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1
trembl
ID A0A067K9S8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12164 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable methyltransferase pmt10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42902: 193547-193915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_170 0.0 - - PREDICTED: probable methyltransferase PMT10 [Jatropha curcas]
2 Hb_000069_740 0.1443404189 - - Esterase precursor, putative [Ricinus communis]
3 Hb_002228_100 0.1780217997 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_000137_070 0.179378745 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
5 Hb_000733_080 0.1823800657 - - PREDICTED: uncharacterized protein LOC105646960 [Jatropha curcas]
6 Hb_006452_110 0.1932359754 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
7 Hb_012340_050 0.1954134319 - - PREDICTED: actin-related protein 5 [Jatropha curcas]
8 Hb_000004_010 0.2008371102 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
9 Hb_001205_160 0.201577584 - - hypothetical protein POPTR_0005s12560g [Populus trichocarpa]
10 Hb_000521_160 0.2024753363 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000826_090 0.2026325668 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]
12 Hb_002027_020 0.2075228853 - - PREDICTED: uncharacterized protein LOC105650039 [Jatropha curcas]
13 Hb_001416_010 0.2158315309 - - Thioredoxin H-type, putative [Ricinus communis]
14 Hb_078185_010 0.216185744 - - -
15 Hb_004784_020 0.2163193519 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
16 Hb_005000_330 0.2179646273 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000243_040 0.2180237241 - - -
18 Hb_012796_020 0.2182033936 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
19 Hb_000343_140 0.2184100624 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
20 Hb_000566_070 0.218696355 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000445_170 Hb_000445_170 Hb_000069_740 Hb_000069_740 Hb_000445_170--Hb_000069_740 Hb_002228_100 Hb_002228_100 Hb_000445_170--Hb_002228_100 Hb_000137_070 Hb_000137_070 Hb_000445_170--Hb_000137_070 Hb_000733_080 Hb_000733_080 Hb_000445_170--Hb_000733_080 Hb_006452_110 Hb_006452_110 Hb_000445_170--Hb_006452_110 Hb_012340_050 Hb_012340_050 Hb_000445_170--Hb_012340_050 Hb_000069_740--Hb_000733_080 Hb_000521_160 Hb_000521_160 Hb_000069_740--Hb_000521_160 Hb_000004_010 Hb_000004_010 Hb_000069_740--Hb_000004_010 Hb_003929_270 Hb_003929_270 Hb_000069_740--Hb_003929_270 Hb_000826_090 Hb_000826_090 Hb_000069_740--Hb_000826_090 Hb_002228_100--Hb_000137_070 Hb_000243_040 Hb_000243_040 Hb_002228_100--Hb_000243_040 Hb_013492_010 Hb_013492_010 Hb_002228_100--Hb_013492_010 Hb_010068_100 Hb_010068_100 Hb_002228_100--Hb_010068_100 Hb_005271_020 Hb_005271_020 Hb_002228_100--Hb_005271_020 Hb_113739_010 Hb_113739_010 Hb_000137_070--Hb_113739_010 Hb_182516_010 Hb_182516_010 Hb_000137_070--Hb_182516_010 Hb_150023_010 Hb_150023_010 Hb_000137_070--Hb_150023_010 Hb_007479_050 Hb_007479_050 Hb_000137_070--Hb_007479_050 Hb_003669_010 Hb_003669_010 Hb_000137_070--Hb_003669_010 Hb_001252_210 Hb_001252_210 Hb_000733_080--Hb_001252_210 Hb_000733_080--Hb_006452_110 Hb_019762_020 Hb_019762_020 Hb_000733_080--Hb_019762_020 Hb_000023_290 Hb_000023_290 Hb_000733_080--Hb_000023_290 Hb_003894_080 Hb_003894_080 Hb_000733_080--Hb_003894_080 Hb_000733_080--Hb_003929_270 Hb_006452_110--Hb_003894_080 Hb_000130_100 Hb_000130_100 Hb_006452_110--Hb_000130_100 Hb_005000_330 Hb_005000_330 Hb_006452_110--Hb_005000_330 Hb_006452_110--Hb_012340_050 Hb_001163_040 Hb_001163_040 Hb_006452_110--Hb_001163_040 Hb_000107_300 Hb_000107_300 Hb_012340_050--Hb_000107_300 Hb_005144_010 Hb_005144_010 Hb_012340_050--Hb_005144_010 Hb_000826_100 Hb_000826_100 Hb_012340_050--Hb_000826_100 Hb_002314_010 Hb_002314_010 Hb_012340_050--Hb_002314_010 Hb_000365_250 Hb_000365_250 Hb_012340_050--Hb_000365_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.856783 0.0763948 0.542424 2.9886 1.02283 0.651454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87907 1.10888 0.400617 0.217063 0.22324

CAGE analysis