Hb_000445_180

Information

Type transcription factor
Description TF Family: TRAF
Location Contig445: 197222-199896
Sequence    

Annotation

kegg
ID rcu:RCOM_0561500
description protein binding protein, putative
nr
ID XP_012078336.1
description PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
swissprot
ID Q6DBN1
description BTB/POZ domain-containing protein At4g08455 OS=Arabidopsis thaliana GN=At4g08455 PE=1 SV=1
trembl
ID A0A067KCY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12165 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42904: 197305-199893
cDNA
(Sanger)
(ID:Location)		 027_C20.ab1: 197686-199893

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_180 0.0 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
2 Hb_000031_060 0.066252159 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
3 Hb_005941_040 0.0795426923 - - PREDICTED: CASP-like protein 5A2 [Jatropha curcas]
4 Hb_009615_150 0.0803064152 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
5 Hb_000224_170 0.0839396697 - - hypothetical protein JCGZ_13777 [Jatropha curcas]
6 Hb_126643_020 0.0843843713 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
7 Hb_001623_420 0.0857045431 - - nucleotide binding protein, putative [Ricinus communis]
8 Hb_000926_330 0.087384449 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
9 Hb_004812_010 0.0896533698 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
10 Hb_000221_210 0.0901465175 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
11 Hb_001584_330 0.0907189521 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
12 Hb_021254_030 0.0911327226 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
13 Hb_000679_010 0.0925017344 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
14 Hb_002685_170 0.0930435016 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
15 Hb_004223_280 0.0946301255 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
16 Hb_001377_290 0.0965775283 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
17 Hb_028995_040 0.0968906875 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
18 Hb_018790_060 0.0972857605 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
19 Hb_002685_140 0.0976722951 - - PREDICTED: membrin-11 [Jatropha curcas]
20 Hb_003058_190 0.0977045634 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000445_180 Hb_000445_180 Hb_000031_060 Hb_000031_060 Hb_000445_180--Hb_000031_060 Hb_005941_040 Hb_005941_040 Hb_000445_180--Hb_005941_040 Hb_009615_150 Hb_009615_150 Hb_000445_180--Hb_009615_150 Hb_000224_170 Hb_000224_170 Hb_000445_180--Hb_000224_170 Hb_126643_020 Hb_126643_020 Hb_000445_180--Hb_126643_020 Hb_001623_420 Hb_001623_420 Hb_000445_180--Hb_001623_420 Hb_011671_430 Hb_011671_430 Hb_000031_060--Hb_011671_430 Hb_000127_130 Hb_000127_130 Hb_000031_060--Hb_000127_130 Hb_000521_320 Hb_000521_320 Hb_000031_060--Hb_000521_320 Hb_000059_330 Hb_000059_330 Hb_000031_060--Hb_000059_330 Hb_003092_040 Hb_003092_040 Hb_000031_060--Hb_003092_040 Hb_002284_010 Hb_002284_010 Hb_005941_040--Hb_002284_010 Hb_002163_020 Hb_002163_020 Hb_005941_040--Hb_002163_020 Hb_000635_180 Hb_000635_180 Hb_005941_040--Hb_000635_180 Hb_028995_040 Hb_028995_040 Hb_005941_040--Hb_028995_040 Hb_000705_210 Hb_000705_210 Hb_005941_040--Hb_000705_210 Hb_005928_110 Hb_005928_110 Hb_009615_150--Hb_005928_110 Hb_026198_050 Hb_026198_050 Hb_009615_150--Hb_026198_050 Hb_021254_030 Hb_021254_030 Hb_009615_150--Hb_021254_030 Hb_000109_160 Hb_000109_160 Hb_009615_150--Hb_000109_160 Hb_000621_080 Hb_000621_080 Hb_009615_150--Hb_000621_080 Hb_000224_170--Hb_001623_420 Hb_031527_040 Hb_031527_040 Hb_000224_170--Hb_031527_040 Hb_000926_330 Hb_000926_330 Hb_000224_170--Hb_000926_330 Hb_000061_420 Hb_000061_420 Hb_000224_170--Hb_000061_420 Hb_181235_010 Hb_181235_010 Hb_000224_170--Hb_181235_010 Hb_003777_330 Hb_003777_330 Hb_000224_170--Hb_003777_330 Hb_000203_160 Hb_000203_160 Hb_126643_020--Hb_000203_160 Hb_002685_010 Hb_002685_010 Hb_126643_020--Hb_002685_010 Hb_002085_110 Hb_002085_110 Hb_126643_020--Hb_002085_110 Hb_002518_140 Hb_002518_140 Hb_126643_020--Hb_002518_140 Hb_005699_070 Hb_005699_070 Hb_126643_020--Hb_005699_070 Hb_004491_010 Hb_004491_010 Hb_126643_020--Hb_004491_010 Hb_001584_330 Hb_001584_330 Hb_001623_420--Hb_001584_330 Hb_000120_950 Hb_000120_950 Hb_001623_420--Hb_000120_950 Hb_005306_110 Hb_005306_110 Hb_001623_420--Hb_005306_110 Hb_002685_140 Hb_002685_140 Hb_001623_420--Hb_002685_140 Hb_010381_070 Hb_010381_070 Hb_001623_420--Hb_010381_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
96.891 83.68 38.8831 45.3667 96.7959 76.6668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
132.974 87.8525 112.82 46.6781 21.4376

CAGE analysis