Hb_000445_260

Information

Type -
Description -
Location Contig445: 282094-283071
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07680g
description POPTRDRAFT_551392; hypothetical protein
nr
ID XP_011027425.1
description PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9PBA8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s07680g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_260 0.0 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
2 Hb_010080_050 0.0705905126 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
3 Hb_001856_210 0.0778308773 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
4 Hb_005211_170 0.0787601838 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
5 Hb_003464_010 0.0876469314 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002307_150 0.0960957932 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
7 Hb_000878_080 0.104246888 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
8 Hb_004880_040 0.1045442881 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
9 Hb_001136_080 0.106461684 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
10 Hb_002028_270 0.1104349021 - - Pectinesterase-1 precursor, putative [Ricinus communis]
11 Hb_009113_020 0.1134118952 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
12 Hb_001971_040 0.1140708008 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
13 Hb_105377_010 0.1146594524 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
14 Hb_007290_040 0.1148687957 - - PREDICTED: histidine-containing phosphotransfer protein 1-like [Jatropha curcas]
15 Hb_000679_290 0.1163399701 transcription factor TF Family: AUX/IAA ATP binding protein, putative [Ricinus communis]
16 Hb_003185_040 0.1164348602 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
17 Hb_003598_020 0.1177249496 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
18 Hb_004319_010 0.1178640163 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
19 Hb_003750_090 0.1191759291 - - BnaC02g34020D [Brassica napus]
20 Hb_002836_110 0.1197159917 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000445_260 Hb_000445_260 Hb_010080_050 Hb_010080_050 Hb_000445_260--Hb_010080_050 Hb_001856_210 Hb_001856_210 Hb_000445_260--Hb_001856_210 Hb_005211_170 Hb_005211_170 Hb_000445_260--Hb_005211_170 Hb_003464_010 Hb_003464_010 Hb_000445_260--Hb_003464_010 Hb_002307_150 Hb_002307_150 Hb_000445_260--Hb_002307_150 Hb_000878_080 Hb_000878_080 Hb_000445_260--Hb_000878_080 Hb_010080_050--Hb_002307_150 Hb_010080_050--Hb_005211_170 Hb_001971_040 Hb_001971_040 Hb_010080_050--Hb_001971_040 Hb_010080_050--Hb_001856_210 Hb_089140_070 Hb_089140_070 Hb_010080_050--Hb_089140_070 Hb_174639_010 Hb_174639_010 Hb_001856_210--Hb_174639_010 Hb_001856_210--Hb_000878_080 Hb_004880_040 Hb_004880_040 Hb_001856_210--Hb_004880_040 Hb_009113_020 Hb_009113_020 Hb_001856_210--Hb_009113_020 Hb_005211_170--Hb_002307_150 Hb_000333_140 Hb_000333_140 Hb_005211_170--Hb_000333_140 Hb_000310_040 Hb_000310_040 Hb_005211_170--Hb_000310_040 Hb_011628_010 Hb_011628_010 Hb_005211_170--Hb_011628_010 Hb_012092_040 Hb_012092_040 Hb_003464_010--Hb_012092_040 Hb_001329_050 Hb_001329_050 Hb_003464_010--Hb_001329_050 Hb_003464_010--Hb_010080_050 Hb_000390_010 Hb_000390_010 Hb_003464_010--Hb_000390_010 Hb_000035_230 Hb_000035_230 Hb_003464_010--Hb_000035_230 Hb_002307_150--Hb_000333_140 Hb_002307_150--Hb_011628_010 Hb_002307_150--Hb_001971_040 Hb_002028_270 Hb_002028_270 Hb_002307_150--Hb_002028_270 Hb_000878_080--Hb_002028_270 Hb_097292_010 Hb_097292_010 Hb_000878_080--Hb_097292_010 Hb_002894_060 Hb_002894_060 Hb_000878_080--Hb_002894_060 Hb_002203_010 Hb_002203_010 Hb_000878_080--Hb_002203_010 Hb_004005_060 Hb_004005_060 Hb_000878_080--Hb_004005_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.147855 0.387668 8.40212 11.2226 0.063949 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.31328 1.00435

CAGE analysis