Hb_000445_310

Information

Type -
Description -
Location Contig445: 349942-353712
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015696mg
description hypothetical protein
nr
ID KJB73151.1
description hypothetical protein B456_011G218000 [Gossypium raimondii]
swissprot
ID Q9M342
description Wall-associated receptor kinase-like 15 OS=Arabidopsis thaliana GN=WAKL15 PE=2 SV=2
trembl
ID A0A0D2UWL7
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G218000 PE=4 SV=1
Gene Ontology
ID GO:0005488
description wall-associated receptor kinase-like 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_310 0.0 - - hypothetical protein B456_011G218000 [Gossypium raimondii]
2 Hb_000163_140 0.0610600954 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
3 Hb_001544_060 0.0837306777 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
4 Hb_000300_070 0.0986956903 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
5 Hb_000252_240 0.1126256768 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
6 Hb_001958_030 0.1147369157 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
7 Hb_000188_070 0.11881302 - - calcineurin-like phosphoesterase [Manihot esculenta]
8 Hb_002918_170 0.1220904628 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
9 Hb_033834_020 0.1273572127 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007254_010 0.1356314609 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
11 Hb_000692_060 0.1392751819 - - calcium-dependent protein kinase, putative [Ricinus communis]
12 Hb_001638_190 0.1409627299 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
13 Hb_002025_290 0.1461299819 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
14 Hb_003387_010 0.1463034445 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
15 Hb_001898_100 0.1483124492 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
16 Hb_028707_120 0.1506927267 - - PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
17 Hb_003453_060 0.1517340826 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
18 Hb_004554_010 0.1541892652 - - PREDICTED: uncharacterized protein LOC105636233 isoform X1 [Jatropha curcas]
19 Hb_005116_130 0.1585746613 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
20 Hb_001579_190 0.1587639296 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000445_310 Hb_000445_310 Hb_000163_140 Hb_000163_140 Hb_000445_310--Hb_000163_140 Hb_001544_060 Hb_001544_060 Hb_000445_310--Hb_001544_060 Hb_000300_070 Hb_000300_070 Hb_000445_310--Hb_000300_070 Hb_000252_240 Hb_000252_240 Hb_000445_310--Hb_000252_240 Hb_001958_030 Hb_001958_030 Hb_000445_310--Hb_001958_030 Hb_000188_070 Hb_000188_070 Hb_000445_310--Hb_000188_070 Hb_002918_170 Hb_002918_170 Hb_000163_140--Hb_002918_170 Hb_000163_140--Hb_001958_030 Hb_000163_140--Hb_000300_070 Hb_003387_010 Hb_003387_010 Hb_000163_140--Hb_003387_010 Hb_000163_140--Hb_000188_070 Hb_001544_060--Hb_000252_240 Hb_003453_060 Hb_003453_060 Hb_001544_060--Hb_003453_060 Hb_001898_100 Hb_001898_100 Hb_001544_060--Hb_001898_100 Hb_003337_020 Hb_003337_020 Hb_001544_060--Hb_003337_020 Hb_001638_190 Hb_001638_190 Hb_001544_060--Hb_001638_190 Hb_000300_070--Hb_000252_240 Hb_000300_070--Hb_001544_060 Hb_124677_010 Hb_124677_010 Hb_000300_070--Hb_124677_010 Hb_002025_290 Hb_002025_290 Hb_000300_070--Hb_002025_290 Hb_000252_240--Hb_003453_060 Hb_023904_010 Hb_023904_010 Hb_000252_240--Hb_023904_010 Hb_000252_240--Hb_001638_190 Hb_001958_030--Hb_000188_070 Hb_000692_060 Hb_000692_060 Hb_001958_030--Hb_000692_060 Hb_002710_040 Hb_002710_040 Hb_001958_030--Hb_002710_040 Hb_033834_020 Hb_033834_020 Hb_001958_030--Hb_033834_020 Hb_001958_030--Hb_001638_190 Hb_001958_030--Hb_003387_010 Hb_000188_070--Hb_033834_020 Hb_000188_070--Hb_000692_060 Hb_007254_010 Hb_007254_010 Hb_000188_070--Hb_007254_010 Hb_000188_070--Hb_001638_190 Hb_000928_100 Hb_000928_100 Hb_000188_070--Hb_000928_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.258272 2.46765 0.169468 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.259182 0.943146

CAGE analysis