Hb_000445_330

Information

Type -
Description -
Location Contig445: 378992-389434
Sequence    

Annotation

kegg
ID rcu:RCOM_1031050
description hypothetical protein
nr
ID XP_002513763.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZVQ6
description F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1
trembl
ID B9RJ44
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1031050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42916: 379038-389608 , PASA_asmbl_42917: 386764-386934 , PASA_asmbl_42918: 385154-385528
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_042404_010 0.1658782949 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
3 Hb_000086_330 0.1842758215 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
4 Hb_019033_010 0.2039118065 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
5 Hb_010128_110 0.2087630188 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
6 Hb_004502_080 0.2134637971 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
7 Hb_068804_150 0.2144212797 - - conserved hypothetical protein [Ricinus communis]
8 Hb_070820_010 0.2205514509 - - hypothetical protein B456_008G232800 [Gossypium raimondii]
9 Hb_000373_290 0.2221701573 - - RecName: Full=Citrate-binding protein; Flags: Precursor [Hevea brasiliensis]
10 Hb_001047_140 0.2272979986 - - -
11 Hb_002301_240 0.2298484394 - - auxin-repressed protein-like protein ARP1 [Manihot esculenta]
12 Hb_029982_010 0.2299289626 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
13 Hb_000175_040 0.2303772494 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
14 Hb_001864_030 0.2314072404 - - thioredoxin h [Hevea brasiliensis]
15 Hb_001141_400 0.2330047687 - - hypothetical protein B456_007G2854002, partial [Gossypium raimondii]
16 Hb_012395_100 0.2330658712 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
17 Hb_007904_090 0.2351151195 - - PREDICTED: uncharacterized protein LOC100261196 [Vitis vinifera]
18 Hb_001631_080 0.2374408548 - - PREDICTED: importin-5-like [Populus euphratica]
19 Hb_000453_210 0.2387826988 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
20 Hb_000699_110 0.2409961184 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]

Gene co-expression network

sample Hb_000445_330 Hb_000445_330 Hb_042404_010 Hb_042404_010 Hb_000445_330--Hb_042404_010 Hb_000086_330 Hb_000086_330 Hb_000445_330--Hb_000086_330 Hb_019033_010 Hb_019033_010 Hb_000445_330--Hb_019033_010 Hb_010128_110 Hb_010128_110 Hb_000445_330--Hb_010128_110 Hb_004502_080 Hb_004502_080 Hb_000445_330--Hb_004502_080 Hb_068804_150 Hb_068804_150 Hb_000445_330--Hb_068804_150 Hb_029982_010 Hb_029982_010 Hb_042404_010--Hb_029982_010 Hb_136765_010 Hb_136765_010 Hb_042404_010--Hb_136765_010 Hb_086859_010 Hb_086859_010 Hb_042404_010--Hb_086859_010 Hb_000331_500 Hb_000331_500 Hb_042404_010--Hb_000331_500 Hb_070820_010 Hb_070820_010 Hb_042404_010--Hb_070820_010 Hb_000086_330--Hb_070820_010 Hb_002301_240 Hb_002301_240 Hb_000086_330--Hb_002301_240 Hb_001047_140 Hb_001047_140 Hb_000086_330--Hb_001047_140 Hb_000086_330--Hb_004502_080 Hb_030765_010 Hb_030765_010 Hb_000086_330--Hb_030765_010 Hb_000699_110 Hb_000699_110 Hb_019033_010--Hb_000699_110 Hb_019033_010--Hb_004502_080 Hb_001437_050 Hb_001437_050 Hb_019033_010--Hb_001437_050 Hb_000175_040 Hb_000175_040 Hb_019033_010--Hb_000175_040 Hb_019033_010--Hb_068804_150 Hb_074197_010 Hb_074197_010 Hb_019033_010--Hb_074197_010 Hb_002843_190 Hb_002843_190 Hb_010128_110--Hb_002843_190 Hb_001631_080 Hb_001631_080 Hb_010128_110--Hb_001631_080 Hb_010128_110--Hb_000175_040 Hb_001141_400 Hb_001141_400 Hb_010128_110--Hb_001141_400 Hb_028365_010 Hb_028365_010 Hb_010128_110--Hb_028365_010 Hb_003756_010 Hb_003756_010 Hb_010128_110--Hb_003756_010 Hb_004502_080--Hb_000175_040 Hb_029888_020 Hb_029888_020 Hb_004502_080--Hb_029888_020 Hb_003057_050 Hb_003057_050 Hb_004502_080--Hb_003057_050 Hb_003057_130 Hb_003057_130 Hb_004502_080--Hb_003057_130 Hb_025246_010 Hb_025246_010 Hb_004502_080--Hb_025246_010 Hb_029921_010 Hb_029921_010 Hb_068804_150--Hb_029921_010 Hb_000390_200 Hb_000390_200 Hb_068804_150--Hb_000390_200 Hb_005271_170 Hb_005271_170 Hb_068804_150--Hb_005271_170 Hb_068804_150--Hb_000699_110 Hb_000065_080 Hb_000065_080 Hb_068804_150--Hb_000065_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
560.603 118.782 59.309 126.297 375.011 429.041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1404.27 516.607 2.13092 0.578191 0.273116

CAGE analysis