Hb_000445_370

Information

Type -
Description -
Location Contig445: 427480-433135
Sequence    

Annotation

kegg
ID rcu:RCOM_0560080
description ATP binding protein, putative
nr
ID XP_012078344.1
description PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
swissprot
ID Q6NPR7
description Probable methyltransferase PMT24 OS=Arabidopsis thaliana GN=At1g29470 PE=2 SV=1
trembl
ID A0A067K9I8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12188 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable methyltransferase pmt24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42921: 427497-433149
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_370 0.0 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
2 Hb_003582_090 0.0879747902 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
3 Hb_035834_010 0.0998614319 - - zinc finger protein, putative [Ricinus communis]
4 Hb_006916_030 0.1013642166 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
5 Hb_000066_040 0.1034784598 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
6 Hb_000167_040 0.1084318242 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
7 Hb_009193_010 0.1087972842 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
8 Hb_003783_050 0.1105620232 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000414_080 0.1107889885 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
10 Hb_001053_020 0.1111733513 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
11 Hb_003847_040 0.1141078063 - - adenosine diphosphatase, putative [Ricinus communis]
12 Hb_002675_080 0.1161842951 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
13 Hb_001109_160 0.1167812338 - - DNA binding protein, putative [Ricinus communis]
14 Hb_001195_660 0.1219878731 - - metalloendopeptidase, putative [Ricinus communis]
15 Hb_002026_030 0.1225013601 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
16 Hb_000120_740 0.1225536457 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
17 Hb_000964_170 0.1228349202 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
18 Hb_000959_300 0.1254844274 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
19 Hb_001195_310 0.1266393232 - - ATP binding protein, putative [Ricinus communis]
20 Hb_001969_140 0.1269354048 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]

Gene co-expression network

sample Hb_000445_370 Hb_000445_370 Hb_003582_090 Hb_003582_090 Hb_000445_370--Hb_003582_090 Hb_035834_010 Hb_035834_010 Hb_000445_370--Hb_035834_010 Hb_006916_030 Hb_006916_030 Hb_000445_370--Hb_006916_030 Hb_000066_040 Hb_000066_040 Hb_000445_370--Hb_000066_040 Hb_000167_040 Hb_000167_040 Hb_000445_370--Hb_000167_040 Hb_009193_010 Hb_009193_010 Hb_000445_370--Hb_009193_010 Hb_002675_080 Hb_002675_080 Hb_003582_090--Hb_002675_080 Hb_001195_660 Hb_001195_660 Hb_003582_090--Hb_001195_660 Hb_000042_050 Hb_000042_050 Hb_003582_090--Hb_000042_050 Hb_001053_020 Hb_001053_020 Hb_003582_090--Hb_001053_020 Hb_003847_040 Hb_003847_040 Hb_003582_090--Hb_003847_040 Hb_036388_010 Hb_036388_010 Hb_035834_010--Hb_036388_010 Hb_003783_050 Hb_003783_050 Hb_035834_010--Hb_003783_050 Hb_000441_050 Hb_000441_050 Hb_035834_010--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_035834_010--Hb_004242_170 Hb_000120_740 Hb_000120_740 Hb_035834_010--Hb_000120_740 Hb_001109_160 Hb_001109_160 Hb_006916_030--Hb_001109_160 Hb_000964_170 Hb_000964_170 Hb_006916_030--Hb_000964_170 Hb_001140_180 Hb_001140_180 Hb_006916_030--Hb_001140_180 Hb_008616_040 Hb_008616_040 Hb_006916_030--Hb_008616_040 Hb_029552_020 Hb_029552_020 Hb_006916_030--Hb_029552_020 Hb_000066_040--Hb_009193_010 Hb_002805_090 Hb_002805_090 Hb_000066_040--Hb_002805_090 Hb_000066_040--Hb_001109_160 Hb_000665_200 Hb_000665_200 Hb_000066_040--Hb_000665_200 Hb_000025_500 Hb_000025_500 Hb_000066_040--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_000066_040--Hb_004041_030 Hb_011310_050 Hb_011310_050 Hb_000167_040--Hb_011310_050 Hb_001195_310 Hb_001195_310 Hb_000167_040--Hb_001195_310 Hb_001969_140 Hb_001969_140 Hb_000167_040--Hb_001969_140 Hb_000997_070 Hb_000997_070 Hb_000167_040--Hb_000997_070 Hb_000679_040 Hb_000679_040 Hb_000167_040--Hb_000679_040 Hb_010381_020 Hb_010381_020 Hb_000167_040--Hb_010381_020 Hb_001821_060 Hb_001821_060 Hb_009193_010--Hb_001821_060 Hb_000256_160 Hb_000256_160 Hb_009193_010--Hb_000256_160 Hb_000510_190 Hb_000510_190 Hb_009193_010--Hb_000510_190 Hb_000414_080 Hb_000414_080 Hb_009193_010--Hb_000414_080 Hb_000997_290 Hb_000997_290 Hb_009193_010--Hb_000997_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39455 18.1701 31.1304 44.2706 10.0465 5.6981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.74485 1.86327 5.4452 19.3648 55.8464

CAGE analysis