Hb_000445_410

Information

Type -
Description -
Location Contig445: 480637-482009
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20690g
description hypothetical protein
nr
ID KCW69280.1
description hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
swissprot
ID Q94AQ9
description Protein STAY-GREEN LIKE, chloroplastic OS=Arabidopsis thaliana GN=SGRL PE=2 SV=1
trembl
ID A0A059BUG6
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02776 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42922: 480119-482559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_410 0.0 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
2 Hb_003793_010 0.0048852685 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
3 Hb_103225_040 0.028578305 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
4 Hb_152868_020 0.0380329668 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
5 Hb_008008_040 0.0441390788 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
6 Hb_001373_170 0.0572771644 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
7 Hb_033149_010 0.0615044191 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_181908_010 0.0615534368 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
9 Hb_000007_190 0.0631133858 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like [Jatropha curcas]
10 Hb_001454_420 0.0687172688 - - multidrug resistance pump, putative [Ricinus communis]
11 Hb_142204_010 0.0692817773 - - pyruvate decarboxylase [Saccharum officinarum]
12 Hb_003858_010 0.0747323257 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
13 Hb_000392_500 0.0777491076 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005653_050 0.0925732006 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
15 Hb_001456_030 0.098402707 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
16 Hb_000086_460 0.09925955 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
17 Hb_010288_010 0.0997523094 - - Beta-glucosidase, putative [Ricinus communis]
18 Hb_004225_010 0.1014122249 - - -
19 Hb_064445_040 0.1018465233 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
20 Hb_000227_360 0.1023716631 - - PREDICTED: mavicyanin [Jatropha curcas]

Gene co-expression network

sample Hb_000445_410 Hb_000445_410 Hb_003793_010 Hb_003793_010 Hb_000445_410--Hb_003793_010 Hb_103225_040 Hb_103225_040 Hb_000445_410--Hb_103225_040 Hb_152868_020 Hb_152868_020 Hb_000445_410--Hb_152868_020 Hb_008008_040 Hb_008008_040 Hb_000445_410--Hb_008008_040 Hb_001373_170 Hb_001373_170 Hb_000445_410--Hb_001373_170 Hb_033149_010 Hb_033149_010 Hb_000445_410--Hb_033149_010 Hb_003793_010--Hb_103225_040 Hb_003793_010--Hb_152868_020 Hb_003793_010--Hb_008008_040 Hb_003793_010--Hb_033149_010 Hb_000007_190 Hb_000007_190 Hb_003793_010--Hb_000007_190 Hb_103225_040--Hb_152868_020 Hb_103225_040--Hb_000007_190 Hb_000392_500 Hb_000392_500 Hb_103225_040--Hb_000392_500 Hb_103225_040--Hb_033149_010 Hb_152868_020--Hb_000007_190 Hb_142204_010 Hb_142204_010 Hb_152868_020--Hb_142204_010 Hb_152868_020--Hb_000392_500 Hb_181908_010 Hb_181908_010 Hb_008008_040--Hb_181908_010 Hb_001454_420 Hb_001454_420 Hb_008008_040--Hb_001454_420 Hb_008008_040--Hb_001373_170 Hb_003858_010 Hb_003858_010 Hb_008008_040--Hb_003858_010 Hb_001373_170--Hb_001454_420 Hb_005653_050 Hb_005653_050 Hb_001373_170--Hb_005653_050 Hb_001373_170--Hb_181908_010 Hb_004225_010 Hb_004225_010 Hb_001373_170--Hb_004225_010 Hb_019953_010 Hb_019953_010 Hb_033149_010--Hb_019953_010 Hb_033149_010--Hb_000007_190 Hb_033149_010--Hb_152868_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.878581 8.20314 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.44928

CAGE analysis