Hb_000446_090

Information

Type -
Description -
Location Contig446: 124442-130173
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23550g
description POPTRDRAFT_725079; glycine-rich RNA-binding family protein
nr
ID XP_002315330.1
description glycine-rich RNA-binding family protein [Populus trichocarpa]
swissprot
ID Q8RWN5
description Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana GN=RZ1C PE=1 SV=1
trembl
ID B9HUL0
description Glycine-rich RNA-binding family protein OS=Populus trichocarpa GN=POPTR_0010s23550g PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein rz1c-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43011: 124436-130318 , PASA_asmbl_43012: 124436-130318 , PASA_asmbl_43014: 126270-126406 , PASA_asmbl_43015: 125307-125530 , PASA_asmbl_43016: 126407-126586
cDNA
(Sanger)
(ID:Location)		 001_A06.ab1: 124436-130044 , 008_J05.ab1: 124436-129165

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000446_090 0.0 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
2 Hb_000661_170 0.0715417524 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
3 Hb_004046_010 0.0735338889 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
4 Hb_001047_020 0.0830051956 - - -
5 Hb_000190_140 0.090871923 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
6 Hb_000110_160 0.0951385697 - - conserved hypothetical protein [Ricinus communis]
7 Hb_015306_020 0.095839705 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
8 Hb_005062_070 0.0983500616 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
9 Hb_002496_050 0.0992585677 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
10 Hb_001454_210 0.0993632116 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
11 Hb_002477_160 0.101713528 - - hypothetical protein L484_013453 [Morus notabilis]
12 Hb_000120_800 0.1030652847 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
13 Hb_000069_460 0.1042474237 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
14 Hb_000614_230 0.1042897729 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
15 Hb_000836_360 0.1044408978 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
16 Hb_008066_010 0.1051806881 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
17 Hb_001329_300 0.1055853604 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
18 Hb_001017_040 0.107160531 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
19 Hb_000754_060 0.1077791862 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
20 Hb_001085_170 0.1081678558 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000446_090 Hb_000446_090 Hb_000661_170 Hb_000661_170 Hb_000446_090--Hb_000661_170 Hb_004046_010 Hb_004046_010 Hb_000446_090--Hb_004046_010 Hb_001047_020 Hb_001047_020 Hb_000446_090--Hb_001047_020 Hb_000190_140 Hb_000190_140 Hb_000446_090--Hb_000190_140 Hb_000110_160 Hb_000110_160 Hb_000446_090--Hb_000110_160 Hb_015306_020 Hb_015306_020 Hb_000446_090--Hb_015306_020 Hb_000661_170--Hb_004046_010 Hb_009382_020 Hb_009382_020 Hb_000661_170--Hb_009382_020 Hb_000051_110 Hb_000051_110 Hb_000661_170--Hb_000051_110 Hb_000134_350 Hb_000134_350 Hb_000661_170--Hb_000134_350 Hb_007943_080 Hb_007943_080 Hb_000661_170--Hb_007943_080 Hb_005062_070 Hb_005062_070 Hb_004046_010--Hb_005062_070 Hb_004046_010--Hb_015306_020 Hb_002890_340 Hb_002890_340 Hb_004046_010--Hb_002890_340 Hb_002477_160 Hb_002477_160 Hb_004046_010--Hb_002477_160 Hb_011918_080 Hb_011918_080 Hb_004046_010--Hb_011918_080 Hb_001840_080 Hb_001840_080 Hb_001047_020--Hb_001840_080 Hb_002215_050 Hb_002215_050 Hb_001047_020--Hb_002215_050 Hb_000120_800 Hb_000120_800 Hb_001047_020--Hb_000120_800 Hb_002686_270 Hb_002686_270 Hb_001047_020--Hb_002686_270 Hb_001047_020--Hb_004046_010 Hb_000754_060 Hb_000754_060 Hb_000190_140--Hb_000754_060 Hb_000120_950 Hb_000120_950 Hb_000190_140--Hb_000120_950 Hb_009111_050 Hb_009111_050 Hb_000190_140--Hb_009111_050 Hb_001454_210 Hb_001454_210 Hb_000190_140--Hb_001454_210 Hb_000190_140--Hb_005062_070 Hb_000190_140--Hb_015306_020 Hb_001329_300 Hb_001329_300 Hb_000110_160--Hb_001329_300 Hb_008066_010 Hb_008066_010 Hb_000110_160--Hb_008066_010 Hb_000110_160--Hb_011918_080 Hb_001051_100 Hb_001051_100 Hb_000110_160--Hb_001051_100 Hb_000567_260 Hb_000567_260 Hb_000110_160--Hb_000567_260 Hb_178968_110 Hb_178968_110 Hb_000110_160--Hb_178968_110 Hb_015306_020--Hb_001454_210 Hb_015306_020--Hb_002890_340 Hb_028872_140 Hb_028872_140 Hb_015306_020--Hb_028872_140 Hb_001789_090 Hb_001789_090 Hb_015306_020--Hb_001789_090 Hb_015306_020--Hb_009111_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.4684 8.66662 2.99972 7.19268 16.1265 29.1931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.673 14.0096 35.0612 10.3269 8.8437

CAGE analysis