Hb_000448_050

Information

Type -
Description -
Location Contig448: 73009-75894
Sequence    

Annotation

kegg
ID rcu:RCOM_1296790
description Alternative oxidase, mitochondrial precursor, putative
nr
ID XP_012084589.1
description PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
swissprot
ID Q40294
description Ubiquinol oxidase, mitochondrial OS=Mangifera indica GN=AOMI 1 PE=1 SV=2
trembl
ID A0A067JTY8
description Ubiquinol oxidase OS=Jatropha curcas GN=JCGZ_20176 PE=3 SV=1
Gene Ontology
ID GO:0016021
description ubiquinol mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43092: 73010-75693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000448_050 0.0 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
2 Hb_022318_020 0.1005157683 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
3 Hb_001648_030 0.1021003334 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
4 Hb_000398_100 0.1112298954 - - Uncharacterized protein isoform 2 [Theobroma cacao]
5 Hb_004223_030 0.1176549334 - - PREDICTED: uncharacterized protein LOC105635347 isoform X1 [Jatropha curcas]
6 Hb_003657_010 0.1208088045 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001825_060 0.1217410057 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
8 Hb_001019_100 0.1277203903 - - BnaC02g13240D [Brassica napus]
9 Hb_002217_020 0.1283405186 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
10 Hb_001635_190 0.1309038288 - - RNA m5u methyltransferase, putative [Ricinus communis]
11 Hb_007810_010 0.1317233121 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
12 Hb_002043_030 0.1320929372 - - hypothetical protein RCOM_1486170 [Ricinus communis]
13 Hb_003124_150 0.1325134398 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
14 Hb_009904_010 0.1325880294 - - hypothetical protein JCGZ_16885 [Jatropha curcas]
15 Hb_004218_020 0.1335107638 - - conserved hypothetical protein [Ricinus communis]
16 Hb_163256_020 0.1336275085 - - fructokinase [Manihot esculenta]
17 Hb_001287_040 0.1341859117 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
18 Hb_002027_350 0.1354803235 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
19 Hb_006740_030 0.136882658 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
20 Hb_000164_100 0.1389090724 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]

Gene co-expression network

sample Hb_000448_050 Hb_000448_050 Hb_022318_020 Hb_022318_020 Hb_000448_050--Hb_022318_020 Hb_001648_030 Hb_001648_030 Hb_000448_050--Hb_001648_030 Hb_000398_100 Hb_000398_100 Hb_000448_050--Hb_000398_100 Hb_004223_030 Hb_004223_030 Hb_000448_050--Hb_004223_030 Hb_003657_010 Hb_003657_010 Hb_000448_050--Hb_003657_010 Hb_001825_060 Hb_001825_060 Hb_000448_050--Hb_001825_060 Hb_163256_020 Hb_163256_020 Hb_022318_020--Hb_163256_020 Hb_002701_010 Hb_002701_010 Hb_022318_020--Hb_002701_010 Hb_006256_030 Hb_006256_030 Hb_022318_020--Hb_006256_030 Hb_022318_020--Hb_001648_030 Hb_001016_100 Hb_001016_100 Hb_022318_020--Hb_001016_100 Hb_001648_030--Hb_000398_100 Hb_001648_030--Hb_163256_020 Hb_005162_060 Hb_005162_060 Hb_001648_030--Hb_005162_060 Hb_002534_100 Hb_002534_100 Hb_001648_030--Hb_002534_100 Hb_000029_060 Hb_000029_060 Hb_000398_100--Hb_000029_060 Hb_012573_040 Hb_012573_040 Hb_000398_100--Hb_012573_040 Hb_000086_420 Hb_000086_420 Hb_000398_100--Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000398_100--Hb_000327_140 Hb_012239_020 Hb_012239_020 Hb_000398_100--Hb_012239_020 Hb_004916_010 Hb_004916_010 Hb_000398_100--Hb_004916_010 Hb_000510_290 Hb_000510_290 Hb_004223_030--Hb_000510_290 Hb_002184_110 Hb_002184_110 Hb_004223_030--Hb_002184_110 Hb_003038_240 Hb_003038_240 Hb_004223_030--Hb_003038_240 Hb_000230_500 Hb_000230_500 Hb_004223_030--Hb_000230_500 Hb_001247_250 Hb_001247_250 Hb_004223_030--Hb_001247_250 Hb_004223_030--Hb_001648_030 Hb_004117_260 Hb_004117_260 Hb_003657_010--Hb_004117_260 Hb_022256_020 Hb_022256_020 Hb_003657_010--Hb_022256_020 Hb_004208_030 Hb_004208_030 Hb_003657_010--Hb_004208_030 Hb_000197_250 Hb_000197_250 Hb_003657_010--Hb_000197_250 Hb_000008_440 Hb_000008_440 Hb_003657_010--Hb_000008_440 Hb_010068_080 Hb_010068_080 Hb_003657_010--Hb_010068_080 Hb_001856_200 Hb_001856_200 Hb_001825_060--Hb_001856_200 Hb_002217_020 Hb_002217_020 Hb_001825_060--Hb_002217_020 Hb_001825_060--Hb_012573_040 Hb_012107_060 Hb_012107_060 Hb_001825_060--Hb_012107_060 Hb_141990_040 Hb_141990_040 Hb_001825_060--Hb_141990_040 Hb_000465_230 Hb_000465_230 Hb_001825_060--Hb_000465_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.2037 123.796 125.871 51.2457 48.4317 21.1173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.8608 124.338 103.323 53.6754 79.2584

CAGE analysis