Hb_000449_040

Information

Type -
Description -
Location Contig449: 13915-18718
Sequence    

Annotation

kegg
ID rcu:RCOM_0531760
description protein with unknown function
nr
ID XP_002526954.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q7T0P7
description Mitochondrial inner membrane protease ATP23 homolog OS=Xenopus laevis PE=2 SV=1
trembl
ID B9SLT5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0531760 PE=4 SV=1
Gene Ontology
ID GO:0004222
description mitochondrial inner membrane protease atp23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000449_040 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_116349_170 0.1125912274 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
3 Hb_002781_020 0.1126620522 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
4 Hb_000487_320 0.1155464259 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
5 Hb_000645_190 0.1163013417 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
6 Hb_143629_230 0.1183031661 - - ring finger, putative [Ricinus communis]
7 Hb_000134_020 0.1226469026 - - thioredoxin-like family protein [Hevea brasiliensis]
8 Hb_001769_100 0.1230225173 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
9 Hb_001950_120 0.1311816387 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
10 Hb_034585_040 0.1319908475 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
11 Hb_100777_010 0.1341383078 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
12 Hb_000362_210 0.1341519241 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
13 Hb_000028_400 0.1351517186 - - Protein SSU72, putative [Ricinus communis]
14 Hb_008847_020 0.1405472715 - - 40S ribosomal protein S17C [Hevea brasiliensis]
15 Hb_011310_060 0.1412690502 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
16 Hb_005590_020 0.1424824863 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
17 Hb_010172_030 0.1448321957 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
18 Hb_012265_010 0.1449311812 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
19 Hb_000085_330 0.1467587015 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
20 Hb_000634_050 0.147993849 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]

Gene co-expression network

sample Hb_000449_040 Hb_000449_040 Hb_116349_170 Hb_116349_170 Hb_000449_040--Hb_116349_170 Hb_002781_020 Hb_002781_020 Hb_000449_040--Hb_002781_020 Hb_000487_320 Hb_000487_320 Hb_000449_040--Hb_000487_320 Hb_000645_190 Hb_000645_190 Hb_000449_040--Hb_000645_190 Hb_143629_230 Hb_143629_230 Hb_000449_040--Hb_143629_230 Hb_000134_020 Hb_000134_020 Hb_000449_040--Hb_000134_020 Hb_000261_460 Hb_000261_460 Hb_116349_170--Hb_000261_460 Hb_011139_020 Hb_011139_020 Hb_116349_170--Hb_011139_020 Hb_000362_210 Hb_000362_210 Hb_116349_170--Hb_000362_210 Hb_100777_010 Hb_100777_010 Hb_116349_170--Hb_100777_010 Hb_007021_020 Hb_007021_020 Hb_116349_170--Hb_007021_020 Hb_000634_050 Hb_000634_050 Hb_002781_020--Hb_000634_050 Hb_008847_020 Hb_008847_020 Hb_002781_020--Hb_008847_020 Hb_010172_030 Hb_010172_030 Hb_002781_020--Hb_010172_030 Hb_000161_050 Hb_000161_050 Hb_002781_020--Hb_000161_050 Hb_002781_020--Hb_000362_210 Hb_000045_190 Hb_000045_190 Hb_002781_020--Hb_000045_190 Hb_001552_080 Hb_001552_080 Hb_000487_320--Hb_001552_080 Hb_004005_010 Hb_004005_010 Hb_000487_320--Hb_004005_010 Hb_001053_160 Hb_001053_160 Hb_000487_320--Hb_001053_160 Hb_000487_320--Hb_000134_020 Hb_000487_320--Hb_000645_190 Hb_003549_020 Hb_003549_020 Hb_000645_190--Hb_003549_020 Hb_001769_100 Hb_001769_100 Hb_000645_190--Hb_001769_100 Hb_000085_330 Hb_000085_330 Hb_000645_190--Hb_000085_330 Hb_000645_190--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_000645_190--Hb_000236_460 Hb_003058_220 Hb_003058_220 Hb_000645_190--Hb_003058_220 Hb_000317_340 Hb_000317_340 Hb_143629_230--Hb_000317_340 Hb_000465_060 Hb_000465_060 Hb_143629_230--Hb_000465_060 Hb_000545_150 Hb_000545_150 Hb_143629_230--Hb_000545_150 Hb_000365_380 Hb_000365_380 Hb_143629_230--Hb_000365_380 Hb_011781_030 Hb_011781_030 Hb_143629_230--Hb_011781_030 Hb_004595_020 Hb_004595_020 Hb_143629_230--Hb_004595_020 Hb_011310_060 Hb_011310_060 Hb_000134_020--Hb_011310_060 Hb_003988_040 Hb_003988_040 Hb_000134_020--Hb_003988_040 Hb_002293_030 Hb_002293_030 Hb_000134_020--Hb_002293_030 Hb_000134_020--Hb_003058_220 Hb_003638_080 Hb_003638_080 Hb_000134_020--Hb_003638_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16365 0.224217 0.161165 0.191264 0.463347 2.04522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65275 3.75534 1.14918 0.470269 0.595916

CAGE analysis