Hb_000449_070

Information

Type -
Description -
Location Contig449: 35876-42901
Sequence    

Annotation

kegg
ID rcu:RCOM_0531810
description hypothetical protein
nr
ID CBI34823.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9SS87
description Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana GN=SEOB PE=1 SV=1
trembl
ID A0A067LGB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10213 PE=4 SV=1
Gene Ontology
ID GO:0043621
description unnamed protein product

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43110: 35719-36926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000449_070 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000020_140 0.0738056138 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
3 Hb_002171_050 0.078283566 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
4 Hb_004020_030 0.0868736451 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
5 Hb_002997_150 0.0883753313 - - hypothetical protein RCOM_1406750 [Ricinus communis]
6 Hb_071079_040 0.0928563819 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
7 Hb_011224_070 0.0953807692 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
8 Hb_001195_710 0.0956886823 - - glycosyltransferase family GT8 protein [Populus deltoides]
9 Hb_002388_070 0.0971653901 - - ring finger protein, putative [Ricinus communis]
10 Hb_049453_010 0.0984708309 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_006717_060 0.1008128399 - - PREDICTED: peroxidase 42 [Jatropha curcas]
12 Hb_000339_060 0.1008325298 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_009421_060 0.1010797314 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
14 Hb_001096_010 0.1014653492 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
15 Hb_002499_030 0.1024227251 - - receptor-kinase, putative [Ricinus communis]
16 Hb_133492_010 0.1026787067 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000083_200 0.1030655721 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001104_060 0.1035298786 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
19 Hb_004917_020 0.1048133715 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
20 Hb_010142_060 0.1055319353 - - Blue copper protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000449_070 Hb_000449_070 Hb_000020_140 Hb_000020_140 Hb_000449_070--Hb_000020_140 Hb_002171_050 Hb_002171_050 Hb_000449_070--Hb_002171_050 Hb_004020_030 Hb_004020_030 Hb_000449_070--Hb_004020_030 Hb_002997_150 Hb_002997_150 Hb_000449_070--Hb_002997_150 Hb_071079_040 Hb_071079_040 Hb_000449_070--Hb_071079_040 Hb_011224_070 Hb_011224_070 Hb_000449_070--Hb_011224_070 Hb_049453_010 Hb_049453_010 Hb_000020_140--Hb_049453_010 Hb_006252_070 Hb_006252_070 Hb_000020_140--Hb_006252_070 Hb_006386_010 Hb_006386_010 Hb_000020_140--Hb_006386_010 Hb_000020_140--Hb_002171_050 Hb_004625_020 Hb_004625_020 Hb_000020_140--Hb_004625_020 Hb_002171_050--Hb_004625_020 Hb_004917_020 Hb_004917_020 Hb_002171_050--Hb_004917_020 Hb_005614_020 Hb_005614_020 Hb_002171_050--Hb_005614_020 Hb_133492_010 Hb_133492_010 Hb_002171_050--Hb_133492_010 Hb_002499_030 Hb_002499_030 Hb_002171_050--Hb_002499_030 Hb_004020_030--Hb_002997_150 Hb_004032_290 Hb_004032_290 Hb_004020_030--Hb_004032_290 Hb_001104_060 Hb_001104_060 Hb_004020_030--Hb_001104_060 Hb_002388_070 Hb_002388_070 Hb_004020_030--Hb_002388_070 Hb_007185_050 Hb_007185_050 Hb_004020_030--Hb_007185_050 Hb_000230_410 Hb_000230_410 Hb_004020_030--Hb_000230_410 Hb_001225_050 Hb_001225_050 Hb_002997_150--Hb_001225_050 Hb_002997_150--Hb_002388_070 Hb_028514_010 Hb_028514_010 Hb_002997_150--Hb_028514_010 Hb_000077_250 Hb_000077_250 Hb_002997_150--Hb_000077_250 Hb_000358_060 Hb_000358_060 Hb_002997_150--Hb_000358_060 Hb_000497_030 Hb_000497_030 Hb_071079_040--Hb_000497_030 Hb_000699_220 Hb_000699_220 Hb_071079_040--Hb_000699_220 Hb_000339_060 Hb_000339_060 Hb_071079_040--Hb_000339_060 Hb_031330_010 Hb_031330_010 Hb_071079_040--Hb_031330_010 Hb_000645_230 Hb_000645_230 Hb_071079_040--Hb_000645_230 Hb_006717_060 Hb_006717_060 Hb_071079_040--Hb_006717_060 Hb_003747_160 Hb_003747_160 Hb_011224_070--Hb_003747_160 Hb_003376_060 Hb_003376_060 Hb_011224_070--Hb_003376_060 Hb_004225_120 Hb_004225_120 Hb_011224_070--Hb_004225_120 Hb_001511_220 Hb_001511_220 Hb_011224_070--Hb_001511_220 Hb_001096_010 Hb_001096_010 Hb_011224_070--Hb_001096_010 Hb_011224_070--Hb_005614_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0248688 1.5114 2.21716 20.3677 0.148158 0.083731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0104711 0 0.618531 6.82376

CAGE analysis