Hb_000450_130

Information

Type -
Description -
Location Contig450: 131478-132437
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06820g
description POPTRDRAFT_557756; hypothetical protein
nr
ID XP_012067357.1
description PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26878 PE=4 SV=1
Gene Ontology
ID GO:0005739
description PREDICTED: uncharacterized protein LOC105630216

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43159: 131373-132455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000450_130 0.0 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
2 Hb_015807_100 0.0804676561 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_000363_480 0.0839676616 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
4 Hb_008921_020 0.0898359187 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
5 Hb_000417_360 0.0932608753 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
6 Hb_006478_160 0.0972503089 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
7 Hb_004223_040 0.097411363 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
8 Hb_000356_090 0.0980558656 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
9 Hb_000915_120 0.0983240953 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
10 Hb_001726_040 0.1000804814 - - hypothetical protein CICLE_v10029230mg [Citrus clementina]
11 Hb_000815_060 0.1002727095 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
12 Hb_000115_230 0.1020108963 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
13 Hb_008772_010 0.1029557243 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000317_070 0.1042194717 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
15 Hb_000735_040 0.1049178461 - - 60S ribosomal protein L32A [Hevea brasiliensis]
16 Hb_010175_040 0.1060253825 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
17 Hb_002588_010 0.106911224 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
18 Hb_004052_050 0.1093915586 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
19 Hb_091433_020 0.1095232736 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
20 Hb_001141_140 0.1095250575 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000450_130 Hb_000450_130 Hb_015807_100 Hb_015807_100 Hb_000450_130--Hb_015807_100 Hb_000363_480 Hb_000363_480 Hb_000450_130--Hb_000363_480 Hb_008921_020 Hb_008921_020 Hb_000450_130--Hb_008921_020 Hb_000417_360 Hb_000417_360 Hb_000450_130--Hb_000417_360 Hb_006478_160 Hb_006478_160 Hb_000450_130--Hb_006478_160 Hb_004223_040 Hb_004223_040 Hb_000450_130--Hb_004223_040 Hb_000115_230 Hb_000115_230 Hb_015807_100--Hb_000115_230 Hb_007192_100 Hb_007192_100 Hb_015807_100--Hb_007192_100 Hb_000349_290 Hb_000349_290 Hb_015807_100--Hb_000349_290 Hb_001172_120 Hb_001172_120 Hb_015807_100--Hb_001172_120 Hb_029904_030 Hb_029904_030 Hb_015807_100--Hb_029904_030 Hb_000574_480 Hb_000574_480 Hb_000363_480--Hb_000574_480 Hb_003226_210 Hb_003226_210 Hb_000363_480--Hb_003226_210 Hb_000215_060 Hb_000215_060 Hb_000363_480--Hb_000215_060 Hb_001998_050 Hb_001998_050 Hb_000363_480--Hb_001998_050 Hb_003656_070 Hb_003656_070 Hb_000363_480--Hb_003656_070 Hb_001214_160 Hb_001214_160 Hb_000363_480--Hb_001214_160 Hb_005063_050 Hb_005063_050 Hb_008921_020--Hb_005063_050 Hb_000576_060 Hb_000576_060 Hb_008921_020--Hb_000576_060 Hb_000735_040 Hb_000735_040 Hb_008921_020--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_008921_020--Hb_000062_650 Hb_000506_070 Hb_000506_070 Hb_008921_020--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_008921_020--Hb_001141_140 Hb_010175_040 Hb_010175_040 Hb_000417_360--Hb_010175_040 Hb_091433_020 Hb_091433_020 Hb_000417_360--Hb_091433_020 Hb_000920_110 Hb_000920_110 Hb_000417_360--Hb_000920_110 Hb_000731_190 Hb_000731_190 Hb_000417_360--Hb_000731_190 Hb_001085_120 Hb_001085_120 Hb_000417_360--Hb_001085_120 Hb_000261_140 Hb_000261_140 Hb_000417_360--Hb_000261_140 Hb_000567_410 Hb_000567_410 Hb_006478_160--Hb_000567_410 Hb_006478_160--Hb_000731_190 Hb_000093_110 Hb_000093_110 Hb_006478_160--Hb_000093_110 Hb_006478_160--Hb_000735_040 Hb_000788_010 Hb_000788_010 Hb_006478_160--Hb_000788_010 Hb_006478_160--Hb_008921_020 Hb_011236_010 Hb_011236_010 Hb_004223_040--Hb_011236_010 Hb_004223_040--Hb_008921_020 Hb_012368_020 Hb_012368_020 Hb_004223_040--Hb_012368_020 Hb_007044_130 Hb_007044_130 Hb_004223_040--Hb_007044_130 Hb_004223_040--Hb_000735_040 Hb_004223_040--Hb_000062_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.7455 16.3723 15.3157 28.3561 10.6177 13.8173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.0932 83.8054 37.0328 18.1008 6.92954

CAGE analysis