Hb_000450_170

Information

Type -
Description -
Location Contig450: 151840-154688
Sequence    

Annotation

kegg
ID rcu:RCOM_1294710
description hypothetical protein
nr
ID XP_002526773.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLA4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1294710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43164: 154416-154937
cDNA
(Sanger)
(ID:Location)		 033_B06.ab1: 154416-154937

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000450_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001195_670 0.128088112 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]
3 Hb_000320_030 0.1513358458 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
4 Hb_000313_280 0.1601924882 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
5 Hb_000015_140 0.1674037064 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
6 Hb_005529_020 0.1779540559 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
7 Hb_002894_070 0.1785569753 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
8 Hb_066207_020 0.1849636289 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
9 Hb_000975_200 0.1868184481 - - PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
10 Hb_001616_100 0.190086365 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
11 Hb_002900_180 0.1908018505 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
12 Hb_006538_160 0.1911234824 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005784_060 0.1929317269 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
14 Hb_000028_620 0.196577635 - - conserved hypothetical protein [Ricinus communis]
15 Hb_059226_020 0.2010522241 - - hypothetical protein B456_008G287700 [Gossypium raimondii]
16 Hb_000890_120 0.203888557 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
17 Hb_003001_050 0.2047094699 - - hypothetical protein RCOM_1749890 [Ricinus communis]
18 Hb_000139_460 0.20745232 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
19 Hb_005813_010 0.2075368884 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
20 Hb_000069_150 0.2098184873 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]

Gene co-expression network

sample Hb_000450_170 Hb_000450_170 Hb_001195_670 Hb_001195_670 Hb_000450_170--Hb_001195_670 Hb_000320_030 Hb_000320_030 Hb_000450_170--Hb_000320_030 Hb_000313_280 Hb_000313_280 Hb_000450_170--Hb_000313_280 Hb_000015_140 Hb_000015_140 Hb_000450_170--Hb_000015_140 Hb_005529_020 Hb_005529_020 Hb_000450_170--Hb_005529_020 Hb_002894_070 Hb_002894_070 Hb_000450_170--Hb_002894_070 Hb_001195_670--Hb_005529_020 Hb_000028_620 Hb_000028_620 Hb_001195_670--Hb_000028_620 Hb_003001_050 Hb_003001_050 Hb_001195_670--Hb_003001_050 Hb_001195_670--Hb_000015_140 Hb_066207_020 Hb_066207_020 Hb_001195_670--Hb_066207_020 Hb_179960_010 Hb_179960_010 Hb_000320_030--Hb_179960_010 Hb_003647_040 Hb_003647_040 Hb_000320_030--Hb_003647_040 Hb_000320_030--Hb_000015_140 Hb_002592_050 Hb_002592_050 Hb_000320_030--Hb_002592_050 Hb_001645_030 Hb_001645_030 Hb_000320_030--Hb_001645_030 Hb_000313_280--Hb_002894_070 Hb_002122_060 Hb_002122_060 Hb_000313_280--Hb_002122_060 Hb_000313_280--Hb_000015_140 Hb_000616_100 Hb_000616_100 Hb_000313_280--Hb_000616_100 Hb_003226_130 Hb_003226_130 Hb_000313_280--Hb_003226_130 Hb_000015_140--Hb_066207_020 Hb_000740_080 Hb_000740_080 Hb_000015_140--Hb_000740_080 Hb_002768_040 Hb_002768_040 Hb_000015_140--Hb_002768_040 Hb_000897_010 Hb_000897_010 Hb_000015_140--Hb_000897_010 Hb_019299_020 Hb_019299_020 Hb_000015_140--Hb_019299_020 Hb_000015_140--Hb_002122_060 Hb_001186_110 Hb_001186_110 Hb_005529_020--Hb_001186_110 Hb_014720_100 Hb_014720_100 Hb_005529_020--Hb_014720_100 Hb_005529_020--Hb_003001_050 Hb_006538_160 Hb_006538_160 Hb_005529_020--Hb_006538_160 Hb_002894_070--Hb_000740_080 Hb_002894_070--Hb_000616_100 Hb_002894_070--Hb_019299_020 Hb_000563_140 Hb_000563_140 Hb_002894_070--Hb_000563_140 Hb_020831_060 Hb_020831_060 Hb_002894_070--Hb_020831_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.181706 2.30717 4.61001 35.3577 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07905 1.01717 1.87432 8.35242 1.17481

CAGE analysis