Hb_000451_010

Information

Type -
Description -
Location Contig451: 3563-31094
Sequence    

Annotation

kegg
ID rcu:RCOM_1316950
description secretory carrier membrane protein, putative
nr
ID XP_002519001.1
description secretory carrier membrane protein, putative [Ricinus communis]
swissprot
ID Q9C6X2
description Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1
trembl
ID B9RZ32
description Secretory carrier membrane protein, putative OS=Ricinus communis GN=RCOM_1316950 PE=4 SV=1
Gene Ontology
ID GO:0005739
description secretory carrier-associated membrane protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43181: 12648-29576 , PASA_asmbl_43182: 12648-29576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000451_010 0.0 - - secretory carrier membrane protein, putative [Ricinus communis]
2 Hb_000618_040 0.0496264785 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
3 Hb_011671_240 0.0523056708 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
4 Hb_004907_080 0.0553808779 - - zinc finger protein, putative [Ricinus communis]
5 Hb_007904_200 0.0572723387 - - protein binding protein, putative [Ricinus communis]
6 Hb_000010_330 0.0596042379 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
7 Hb_032208_090 0.0605755573 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
8 Hb_001009_270 0.0668182053 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
9 Hb_003175_010 0.0675190284 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
10 Hb_003417_020 0.0679971349 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
11 Hb_019280_040 0.0686580334 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_143629_210 0.0708230033 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
13 Hb_003030_070 0.0711589746 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
14 Hb_002506_020 0.0720168334 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
15 Hb_000019_030 0.0741440527 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
16 Hb_005357_080 0.074407314 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
17 Hb_003195_070 0.0745048428 - - Uncharacterized protein isoform 1 [Theobroma cacao]
18 Hb_005144_160 0.0749675338 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
19 Hb_007059_010 0.0751636387 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
20 Hb_004109_090 0.0752711435 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000451_010 Hb_000451_010 Hb_000618_040 Hb_000618_040 Hb_000451_010--Hb_000618_040 Hb_011671_240 Hb_011671_240 Hb_000451_010--Hb_011671_240 Hb_004907_080 Hb_004907_080 Hb_000451_010--Hb_004907_080 Hb_007904_200 Hb_007904_200 Hb_000451_010--Hb_007904_200 Hb_000010_330 Hb_000010_330 Hb_000451_010--Hb_000010_330 Hb_032208_090 Hb_032208_090 Hb_000451_010--Hb_032208_090 Hb_005357_080 Hb_005357_080 Hb_000618_040--Hb_005357_080 Hb_008511_130 Hb_008511_130 Hb_000618_040--Hb_008511_130 Hb_007416_280 Hb_007416_280 Hb_000618_040--Hb_007416_280 Hb_000019_030 Hb_000019_030 Hb_000618_040--Hb_000019_030 Hb_000230_560 Hb_000230_560 Hb_000618_040--Hb_000230_560 Hb_011671_240--Hb_000019_030 Hb_011671_240--Hb_000618_040 Hb_001575_090 Hb_001575_090 Hb_011671_240--Hb_001575_090 Hb_011671_240--Hb_004907_080 Hb_019280_040 Hb_019280_040 Hb_011671_240--Hb_019280_040 Hb_001009_270 Hb_001009_270 Hb_004907_080--Hb_001009_270 Hb_004907_080--Hb_032208_090 Hb_003177_030 Hb_003177_030 Hb_004907_080--Hb_003177_030 Hb_000777_040 Hb_000777_040 Hb_004907_080--Hb_000777_040 Hb_007904_200--Hb_000010_330 Hb_010457_030 Hb_010457_030 Hb_007904_200--Hb_010457_030 Hb_000125_130 Hb_000125_130 Hb_007904_200--Hb_000125_130 Hb_003195_070 Hb_003195_070 Hb_007904_200--Hb_003195_070 Hb_001047_030 Hb_001047_030 Hb_007904_200--Hb_001047_030 Hb_000010_330--Hb_010457_030 Hb_000010_330--Hb_019280_040 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_002200_080 Hb_002200_080 Hb_000010_330--Hb_002200_080 Hb_048937_040 Hb_048937_040 Hb_000010_330--Hb_048937_040 Hb_032208_090--Hb_001009_270 Hb_000579_140 Hb_000579_140 Hb_032208_090--Hb_000579_140 Hb_003092_040 Hb_003092_040 Hb_032208_090--Hb_003092_040 Hb_011344_210 Hb_011344_210 Hb_032208_090--Hb_011344_210 Hb_032208_090--Hb_000618_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.8638 15.7819 23.0964 30.1279 39.1646 42.0638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.1383 33.0855 39.8404 18.7499 14.5705

CAGE analysis