Hb_000451_040

Information

Type -
Description -
Location Contig451: 124575-126546
Sequence    

Annotation

kegg
ID rcu:RCOM_0781570
description hypothetical protein
nr
ID XP_002528212.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8S8Q6
description Tetraspanin-8 OS=Arabidopsis thaliana GN=TET8 PE=2 SV=1
trembl
ID B9SQE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0781570 PE=4 SV=1
Gene Ontology
ID GO:0016021
description tetraspanin-8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43185: 124579-126392
cDNA
(Sanger)
(ID:Location)		 008_G21.ab1: 125771-126392 , 042_P20.ab1: 125012-126361 , 052_B17.ab1: 124896-126272

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000451_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000984_290 0.0997847444 - - PREDICTED: putative lipase ROG1 isoform X2 [Jatropha curcas]
3 Hb_061908_030 0.1260068387 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
4 Hb_010126_030 0.1286502247 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
5 Hb_001989_060 0.1293352652 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
6 Hb_004586_130 0.1298977095 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001898_010 0.1309664117 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
8 Hb_005375_070 0.1313427444 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
9 Hb_033149_020 0.1324675127 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
10 Hb_000086_620 0.1357083038 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
11 Hb_004712_160 0.1396535533 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
12 Hb_000283_100 0.143270404 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
13 Hb_007574_050 0.1449553101 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
14 Hb_002151_130 0.1458844066 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
15 Hb_002936_030 0.1460997791 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
16 Hb_002960_100 0.1467849461 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
17 Hb_000336_060 0.1481030978 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
18 Hb_052434_010 0.1485760837 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Sesamum indicum]
19 Hb_124677_020 0.1503093388 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
20 Hb_005814_010 0.1514287234 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000451_040 Hb_000451_040 Hb_000984_290 Hb_000984_290 Hb_000451_040--Hb_000984_290 Hb_061908_030 Hb_061908_030 Hb_000451_040--Hb_061908_030 Hb_010126_030 Hb_010126_030 Hb_000451_040--Hb_010126_030 Hb_001989_060 Hb_001989_060 Hb_000451_040--Hb_001989_060 Hb_004586_130 Hb_004586_130 Hb_000451_040--Hb_004586_130 Hb_001898_010 Hb_001898_010 Hb_000451_040--Hb_001898_010 Hb_002151_130 Hb_002151_130 Hb_000984_290--Hb_002151_130 Hb_000984_290--Hb_061908_030 Hb_000172_410 Hb_000172_410 Hb_000984_290--Hb_000172_410 Hb_003078_070 Hb_003078_070 Hb_000984_290--Hb_003078_070 Hb_124677_020 Hb_124677_020 Hb_000984_290--Hb_124677_020 Hb_061908_030--Hb_010126_030 Hb_061908_030--Hb_002151_130 Hb_061908_030--Hb_004586_130 Hb_002960_100 Hb_002960_100 Hb_061908_030--Hb_002960_100 Hb_000283_100 Hb_000283_100 Hb_010126_030--Hb_000283_100 Hb_010126_030--Hb_001989_060 Hb_010126_030--Hb_004586_130 Hb_000680_180 Hb_000680_180 Hb_010126_030--Hb_000680_180 Hb_001999_170 Hb_001999_170 Hb_010126_030--Hb_001999_170 Hb_001989_060--Hb_000283_100 Hb_007120_010 Hb_007120_010 Hb_001989_060--Hb_007120_010 Hb_011930_120 Hb_011930_120 Hb_001989_060--Hb_011930_120 Hb_001989_060--Hb_004586_130 Hb_001989_060--Hb_000680_180 Hb_004586_130--Hb_000283_100 Hb_004586_130--Hb_002151_130 Hb_000221_230 Hb_000221_230 Hb_004586_130--Hb_000221_230 Hb_002876_070 Hb_002876_070 Hb_004586_130--Hb_002876_070 Hb_005375_070 Hb_005375_070 Hb_001898_010--Hb_005375_070 Hb_000402_030 Hb_000402_030 Hb_001898_010--Hb_000402_030 Hb_004712_160 Hb_004712_160 Hb_001898_010--Hb_004712_160 Hb_007574_050 Hb_007574_050 Hb_001898_010--Hb_007574_050 Hb_098160_010 Hb_098160_010 Hb_001898_010--Hb_098160_010 Hb_009476_110 Hb_009476_110 Hb_001898_010--Hb_009476_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.3784 1793.69 1142.83 447.329 74.0405 44.8823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.5059 19.8576 44.2486 211.19 157.459

CAGE analysis