Hb_000451_060

Information

Type -
Description -
Location Contig451: 183113-195338
Sequence    

Annotation

kegg
ID cit:102607433
description cytochrome c oxidase subunit 6b-2-like
nr
ID XP_006453502.1
description hypothetical protein CICLE_v10010074mg [Citrus clementina]
swissprot
ID Q945L0
description Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1
trembl
ID A0A067FGN4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034905mg PE=4 SV=1
Gene Ontology
ID GO:0005739
description cytochrome c oxidase subunit 6b-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43187: 184172-195362 , PASA_asmbl_43189: 192172-192921
cDNA
(Sanger)
(ID:Location)		 005_H20.ab1: 184280-195303 , 022_I17.ab1: 184313-195330 , 040_J21.ab1: 184254-195331 , 043_H02.ab1: 184172-195363 , 047_B18.ab1: 184280-195330 , 047_F03.ab1: 184173-195330 , 050_N08.ab1: 184173-195330

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000451_060 0.0 - - hypothetical protein CICLE_v10010074mg [Citrus clementina]
2 Hb_000191_030 0.0625843291 - - hypothetical protein POPTR_0012s07830g [Populus trichocarpa]
3 Hb_004871_020 0.0964651507 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
4 Hb_004052_020 0.1038509528 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
5 Hb_153544_010 0.106222606 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
6 Hb_000317_070 0.1077174474 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
7 Hb_001221_310 0.1087695825 - - sec61 gamma subunit, putative [Ricinus communis]
8 Hb_002900_160 0.1104151959 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
9 Hb_000312_090 0.1129297085 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
10 Hb_026398_010 0.1135424957 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
11 Hb_000062_650 0.1158974349 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
12 Hb_000617_090 0.1160932996 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
13 Hb_000111_340 0.1187456289 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
14 Hb_001269_270 0.1191896582 - - 60S ribosomal protein L27B [Hevea brasiliensis]
15 Hb_003125_150 0.1192382345 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
16 Hb_019516_100 0.1196955239 - - 40S ribosomal protein S14, putative [Ricinus communis]
17 Hb_126861_010 0.1209684814 - - hypothetical protein M569_05914, partial [Genlisea aurea]
18 Hb_002588_010 0.1212901932 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
19 Hb_000159_070 0.1225566037 - - JHL03K20.4 [Jatropha curcas]
20 Hb_001045_080 0.1232428455 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]

Gene co-expression network

sample Hb_000451_060 Hb_000451_060 Hb_000191_030 Hb_000191_030 Hb_000451_060--Hb_000191_030 Hb_004871_020 Hb_004871_020 Hb_000451_060--Hb_004871_020 Hb_004052_020 Hb_004052_020 Hb_000451_060--Hb_004052_020 Hb_153544_010 Hb_153544_010 Hb_000451_060--Hb_153544_010 Hb_000317_070 Hb_000317_070 Hb_000451_060--Hb_000317_070 Hb_001221_310 Hb_001221_310 Hb_000451_060--Hb_001221_310 Hb_000191_030--Hb_004871_020 Hb_000191_030--Hb_153544_010 Hb_019516_100 Hb_019516_100 Hb_000191_030--Hb_019516_100 Hb_000191_030--Hb_000317_070 Hb_000111_340 Hb_000111_340 Hb_000191_030--Hb_000111_340 Hb_004871_020--Hb_000317_070 Hb_004871_020--Hb_153544_010 Hb_007441_300 Hb_007441_300 Hb_004871_020--Hb_007441_300 Hb_000525_020 Hb_000525_020 Hb_004871_020--Hb_000525_020 Hb_009711_020 Hb_009711_020 Hb_004871_020--Hb_009711_020 Hb_000030_290 Hb_000030_290 Hb_004871_020--Hb_000030_290 Hb_012753_230 Hb_012753_230 Hb_004052_020--Hb_012753_230 Hb_000057_070 Hb_000057_070 Hb_004052_020--Hb_000057_070 Hb_003058_080 Hb_003058_080 Hb_004052_020--Hb_003058_080 Hb_012573_070 Hb_012573_070 Hb_004052_020--Hb_012573_070 Hb_002900_160 Hb_002900_160 Hb_004052_020--Hb_002900_160 Hb_000948_210 Hb_000948_210 Hb_004052_020--Hb_000948_210 Hb_153544_010--Hb_000030_290 Hb_153544_010--Hb_000317_070 Hb_000417_360 Hb_000417_360 Hb_153544_010--Hb_000417_360 Hb_091433_020 Hb_091433_020 Hb_153544_010--Hb_091433_020 Hb_143496_010 Hb_143496_010 Hb_153544_010--Hb_143496_010 Hb_000317_070--Hb_007441_300 Hb_174865_010 Hb_174865_010 Hb_000317_070--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000317_070--Hb_000735_040 Hb_000093_110 Hb_000093_110 Hb_000317_070--Hb_000093_110 Hb_000312_090 Hb_000312_090 Hb_001221_310--Hb_000312_090 Hb_000699_160 Hb_000699_160 Hb_001221_310--Hb_000699_160 Hb_006452_040 Hb_006452_040 Hb_001221_310--Hb_006452_040 Hb_000617_090 Hb_000617_090 Hb_001221_310--Hb_000617_090 Hb_010672_060 Hb_010672_060 Hb_001221_310--Hb_010672_060 Hb_001155_040 Hb_001155_040 Hb_001221_310--Hb_001155_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.2743 41.5835 79.9203 85.0404 73.2826 72.7505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
284.713 360.838 67.5176 81.7224 20.9693

CAGE analysis