Hb_000451_070

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig451: 216598-219609
Sequence    

Annotation

kegg
ID rcu:RCOM_0496700
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012065676.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067LH18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16776 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43190: 216823-220718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000451_070 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_000402_210 0.1136558651 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
3 Hb_001894_050 0.1169188752 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
4 Hb_088753_010 0.1205431982 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
5 Hb_189208_020 0.1212764125 - - LRX2, putative [Ricinus communis]
6 Hb_002042_130 0.1223450958 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
7 Hb_001153_180 0.1237391933 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
8 Hb_028487_020 0.1275635286 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
9 Hb_000302_260 0.1337400346 - - hypothetical protein [Bruguiera gymnorhiza]
10 Hb_001564_080 0.139916548 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
11 Hb_001902_190 0.1422971019 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
12 Hb_002097_200 0.1441998886 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
13 Hb_007382_120 0.1469570836 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
14 Hb_000175_100 0.1471908261 - - protein kinase, putative [Ricinus communis]
15 Hb_000432_040 0.1472994559 - - PREDICTED: remorin-like [Jatropha curcas]
16 Hb_011618_060 0.1489997528 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
17 Hb_115241_010 0.152410814 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
18 Hb_000016_100 0.1543237822 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
19 Hb_000649_240 0.155058543 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
20 Hb_001183_010 0.1557462584 - - -

Gene co-expression network

sample Hb_000451_070 Hb_000451_070 Hb_000402_210 Hb_000402_210 Hb_000451_070--Hb_000402_210 Hb_001894_050 Hb_001894_050 Hb_000451_070--Hb_001894_050 Hb_088753_010 Hb_088753_010 Hb_000451_070--Hb_088753_010 Hb_189208_020 Hb_189208_020 Hb_000451_070--Hb_189208_020 Hb_002042_130 Hb_002042_130 Hb_000451_070--Hb_002042_130 Hb_001153_180 Hb_001153_180 Hb_000451_070--Hb_001153_180 Hb_000402_210--Hb_088753_010 Hb_000302_260 Hb_000302_260 Hb_000402_210--Hb_000302_260 Hb_000402_210--Hb_002042_130 Hb_007382_120 Hb_007382_120 Hb_000402_210--Hb_007382_120 Hb_006538_080 Hb_006538_080 Hb_000402_210--Hb_006538_080 Hb_001817_160 Hb_001817_160 Hb_001894_050--Hb_001817_160 Hb_001564_080 Hb_001564_080 Hb_001894_050--Hb_001564_080 Hb_001894_050--Hb_189208_020 Hb_000915_160 Hb_000915_160 Hb_001894_050--Hb_000915_160 Hb_001894_050--Hb_002042_130 Hb_002097_200 Hb_002097_200 Hb_088753_010--Hb_002097_200 Hb_088753_010--Hb_189208_020 Hb_006788_140 Hb_006788_140 Hb_088753_010--Hb_006788_140 Hb_088753_010--Hb_000302_260 Hb_189208_020--Hb_002097_200 Hb_003175_030 Hb_003175_030 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_189208_020--Hb_006788_140 Hb_189208_020--Hb_001564_080 Hb_000538_230 Hb_000538_230 Hb_002042_130--Hb_000538_230 Hb_002042_130--Hb_000302_260 Hb_034688_020 Hb_034688_020 Hb_002042_130--Hb_034688_020 Hb_000649_110 Hb_000649_110 Hb_002042_130--Hb_000649_110 Hb_001159_110 Hb_001159_110 Hb_002042_130--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_002042_130--Hb_005074_030 Hb_001153_180--Hb_189208_020 Hb_011618_060 Hb_011618_060 Hb_001153_180--Hb_011618_060 Hb_001153_180--Hb_001894_050 Hb_092462_020 Hb_092462_020 Hb_001153_180--Hb_092462_020 Hb_001153_180--Hb_002042_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.833099 2.89059 0.610166 0.825556 0.706619 0.591111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89056 2.26561 0.676724 1.6745 0.580442

CAGE analysis