Hb_000453_040

Information

Type -
Description -
Location Contig453: 27941-32332
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24710g
description POPTRDRAFT_815347; hypothetical protein
nr
ID KHG20120.1
description Triosephosphate isomerase, cytosolic [Gossypium arboreum]
swissprot
ID P48495
description Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1
trembl
ID A0A0B0P4Z3
description Triosephosphate isomerase OS=Gossypium arboreum GN=F383_00736 PE=3 SV=1
Gene Ontology
ID GO:0005618
description triosephosphate cytosolic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43250: 31220-31751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_040 0.0 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
2 Hb_003994_140 0.0898554737 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002232_190 0.0970333573 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002042_030 0.099192007 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
5 Hb_000608_350 0.1018404106 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
6 Hb_098315_070 0.1043938913 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105636030 isoform X1 [Jatropha curcas]
7 Hb_000138_130 0.1087580624 - - hypothetical protein JCGZ_25540 [Jatropha curcas]
8 Hb_000735_050 0.1090077271 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
9 Hb_008921_010 0.1092463137 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
10 Hb_004223_110 0.109980801 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
11 Hb_003746_030 0.1103739214 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
12 Hb_000287_050 0.1117302527 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
13 Hb_039605_010 0.1143215982 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
14 Hb_011249_030 0.115001877 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
15 Hb_002928_010 0.115491264 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
16 Hb_000414_050 0.1162621182 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
17 Hb_000525_100 0.1168918314 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
18 Hb_001486_170 0.1176284319 - - PREDICTED: syntaxin-132 [Jatropha curcas]
19 Hb_001301_220 0.118283986 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
20 Hb_000608_110 0.1184953701 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]

Gene co-expression network

sample Hb_000453_040 Hb_000453_040 Hb_003994_140 Hb_003994_140 Hb_000453_040--Hb_003994_140 Hb_002232_190 Hb_002232_190 Hb_000453_040--Hb_002232_190 Hb_002042_030 Hb_002042_030 Hb_000453_040--Hb_002042_030 Hb_000608_350 Hb_000608_350 Hb_000453_040--Hb_000608_350 Hb_098315_070 Hb_098315_070 Hb_000453_040--Hb_098315_070 Hb_000138_130 Hb_000138_130 Hb_000453_040--Hb_000138_130 Hb_002928_010 Hb_002928_010 Hb_003994_140--Hb_002928_010 Hb_039605_010 Hb_039605_010 Hb_003994_140--Hb_039605_010 Hb_000563_330 Hb_000563_330 Hb_003994_140--Hb_000563_330 Hb_000525_100 Hb_000525_100 Hb_003994_140--Hb_000525_100 Hb_000983_120 Hb_000983_120 Hb_003994_140--Hb_000983_120 Hb_003994_140--Hb_002042_030 Hb_011249_030 Hb_011249_030 Hb_002232_190--Hb_011249_030 Hb_000287_050 Hb_000287_050 Hb_002232_190--Hb_000287_050 Hb_029142_030 Hb_029142_030 Hb_002232_190--Hb_029142_030 Hb_002232_190--Hb_002042_030 Hb_002232_190--Hb_098315_070 Hb_000414_050 Hb_000414_050 Hb_002042_030--Hb_000414_050 Hb_000915_080 Hb_000915_080 Hb_002042_030--Hb_000915_080 Hb_001301_220 Hb_001301_220 Hb_002042_030--Hb_001301_220 Hb_000718_070 Hb_000718_070 Hb_002042_030--Hb_000718_070 Hb_001418_040 Hb_001418_040 Hb_002042_030--Hb_001418_040 Hb_027472_120 Hb_027472_120 Hb_002042_030--Hb_027472_120 Hb_007800_020 Hb_007800_020 Hb_000608_350--Hb_007800_020 Hb_000637_140 Hb_000637_140 Hb_000608_350--Hb_000637_140 Hb_007163_060 Hb_007163_060 Hb_000608_350--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_000608_350--Hb_005322_050 Hb_004223_110 Hb_004223_110 Hb_000608_350--Hb_004223_110 Hb_005723_020 Hb_005723_020 Hb_000608_350--Hb_005723_020 Hb_098315_070--Hb_002042_030 Hb_098315_070--Hb_003994_140 Hb_000265_220 Hb_000265_220 Hb_098315_070--Hb_000265_220 Hb_002896_060 Hb_002896_060 Hb_098315_070--Hb_002896_060 Hb_000776_100 Hb_000776_100 Hb_000138_130--Hb_000776_100 Hb_000138_130--Hb_000414_050 Hb_000138_130--Hb_000525_100 Hb_002615_120 Hb_002615_120 Hb_000138_130--Hb_002615_120 Hb_000138_130--Hb_002928_010 Hb_000138_130--Hb_002042_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
223.804 175.611 444.743 267.512 351.497 257.623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
120.611 119.768 61.9064 81.5895 101.633

CAGE analysis