Hb_000453_060

Information

Type -
Description -
Location Contig453: 39357-41066
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02730g
description hypothetical protein
nr
ID XP_012075956.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g11690 [Jatropha curcas]
swissprot
ID Q9T0D6
description Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
trembl
ID U5FJB2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s02730g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43253: 38744-39377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g11690 [Jatropha curcas]
2 Hb_000291_090 0.0819856747 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X2 [Jatropha curcas]
3 Hb_000170_150 0.0831478166 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
4 Hb_000166_130 0.0856031523 - - conserved hypothetical protein [Ricinus communis]
5 Hb_013399_070 0.0885065697 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
6 Hb_003058_060 0.0894360073 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
7 Hb_000656_380 0.0920758652 - - PREDICTED: exportin-T [Jatropha curcas]
8 Hb_027472_050 0.0922145617 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
9 Hb_002170_050 0.0929645115 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Jatropha curcas]
10 Hb_001195_320 0.0931784422 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
11 Hb_159558_010 0.096580576 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
12 Hb_003581_250 0.0969782222 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
13 Hb_000369_130 0.0978299036 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
14 Hb_000183_020 0.0979878882 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
15 Hb_000575_120 0.0981605096 - - hypothetical protein POPTR_0011s02060g [Populus trichocarpa]
16 Hb_003029_110 0.1004569679 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
17 Hb_000264_030 0.1005347508 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
18 Hb_002864_010 0.1005357415 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
19 Hb_004602_040 0.1024764207 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
20 Hb_023226_080 0.1027461184 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000453_060 Hb_000453_060 Hb_000291_090 Hb_000291_090 Hb_000453_060--Hb_000291_090 Hb_000170_150 Hb_000170_150 Hb_000453_060--Hb_000170_150 Hb_000166_130 Hb_000166_130 Hb_000453_060--Hb_000166_130 Hb_013399_070 Hb_013399_070 Hb_000453_060--Hb_013399_070 Hb_003058_060 Hb_003058_060 Hb_000453_060--Hb_003058_060 Hb_000656_380 Hb_000656_380 Hb_000453_060--Hb_000656_380 Hb_001054_030 Hb_001054_030 Hb_000291_090--Hb_001054_030 Hb_032808_030 Hb_032808_030 Hb_000291_090--Hb_032808_030 Hb_000009_500 Hb_000009_500 Hb_000291_090--Hb_000009_500 Hb_002006_040 Hb_002006_040 Hb_000291_090--Hb_002006_040 Hb_002960_080 Hb_002960_080 Hb_000291_090--Hb_002960_080 Hb_000264_030 Hb_000264_030 Hb_000170_150--Hb_000264_030 Hb_159558_010 Hb_159558_010 Hb_000170_150--Hb_159558_010 Hb_001767_140 Hb_001767_140 Hb_000170_150--Hb_001767_140 Hb_003371_110 Hb_003371_110 Hb_000170_150--Hb_003371_110 Hb_003470_080 Hb_003470_080 Hb_000170_150--Hb_003470_080 Hb_000289_040 Hb_000289_040 Hb_000170_150--Hb_000289_040 Hb_003029_110 Hb_003029_110 Hb_000166_130--Hb_003029_110 Hb_000343_120 Hb_000343_120 Hb_000166_130--Hb_000343_120 Hb_001195_320 Hb_001195_320 Hb_000166_130--Hb_001195_320 Hb_000035_290 Hb_000035_290 Hb_000166_130--Hb_000035_290 Hb_000166_130--Hb_003371_110 Hb_001199_100 Hb_001199_100 Hb_000166_130--Hb_001199_100 Hb_013399_070--Hb_000170_150 Hb_003768_050 Hb_003768_050 Hb_013399_070--Hb_003768_050 Hb_001946_340 Hb_001946_340 Hb_013399_070--Hb_001946_340 Hb_000069_470 Hb_000069_470 Hb_013399_070--Hb_000069_470 Hb_001821_090 Hb_001821_090 Hb_013399_070--Hb_001821_090 Hb_000579_230 Hb_000579_230 Hb_013399_070--Hb_000579_230 Hb_000369_130 Hb_000369_130 Hb_003058_060--Hb_000369_130 Hb_003058_060--Hb_001821_090 Hb_002107_070 Hb_002107_070 Hb_003058_060--Hb_002107_070 Hb_002170_050 Hb_002170_050 Hb_003058_060--Hb_002170_050 Hb_003058_060--Hb_000579_230 Hb_104061_020 Hb_104061_020 Hb_003058_060--Hb_104061_020 Hb_000012_260 Hb_000012_260 Hb_000656_380--Hb_000012_260 Hb_000494_070 Hb_000494_070 Hb_000656_380--Hb_000494_070 Hb_000173_490 Hb_000173_490 Hb_000656_380--Hb_000173_490 Hb_000656_380--Hb_000579_230 Hb_000656_380--Hb_001946_340 Hb_002784_020 Hb_002784_020 Hb_000656_380--Hb_002784_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.828265 2.03552 0.69802 0.856976 1.35226 2.02233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.618569 1.20611 0.838734 1.36602 0.934333

CAGE analysis