Hb_000453_090

Information

Type -
Description -
Location Contig453: 47565-49024
Sequence    

Annotation

kegg
ID rcu:RCOM_1166010
description mitochondrial import inner membrane translocase subunit tim9, putative
nr
ID NP_001295685.1
description mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
swissprot
ID Q9XGX9
description Mitochondrial import inner membrane translocase subunit TIM9 OS=Arabidopsis thaliana GN=TIM9 PE=1 SV=2
trembl
ID D6BR56
description Mitochondrial import inner membrane translocase OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID GO:0005743
description mitochondrial import inner membrane translocase subunit tim9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43256: 47481-49088
cDNA
(Sanger)
(ID:Location)		 045_P09.ab1: 47481-49088

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_090 0.0 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
2 Hb_003683_110 0.0681299854 - - JHL10I11.3 [Jatropha curcas]
3 Hb_001300_040 0.0703119153 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
4 Hb_004846_090 0.0727004437 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
5 Hb_006925_040 0.0805830481 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
6 Hb_010672_060 0.0832219761 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
7 Hb_001780_040 0.0859179709 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
8 Hb_001141_140 0.0866159425 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
9 Hb_002768_030 0.0881100095 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
10 Hb_143496_010 0.08906337 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
11 Hb_005063_050 0.0944815725 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
12 Hb_002843_140 0.0946421397 - - hypothetical protein JCGZ_20933 [Jatropha curcas]
13 Hb_003226_100 0.0962349666 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
14 Hb_007416_030 0.0971666458 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
15 Hb_010175_040 0.0974449579 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
16 Hb_000699_160 0.0978494594 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
17 Hb_000996_140 0.0979533452 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
18 Hb_004459_040 0.0982994028 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
19 Hb_012753_230 0.0999993604 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
20 Hb_002431_050 0.1001370862 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]

Gene co-expression network

sample Hb_000453_090 Hb_000453_090 Hb_003683_110 Hb_003683_110 Hb_000453_090--Hb_003683_110 Hb_001300_040 Hb_001300_040 Hb_000453_090--Hb_001300_040 Hb_004846_090 Hb_004846_090 Hb_000453_090--Hb_004846_090 Hb_006925_040 Hb_006925_040 Hb_000453_090--Hb_006925_040 Hb_010672_060 Hb_010672_060 Hb_000453_090--Hb_010672_060 Hb_001780_040 Hb_001780_040 Hb_000453_090--Hb_001780_040 Hb_002768_030 Hb_002768_030 Hb_003683_110--Hb_002768_030 Hb_003683_110--Hb_001780_040 Hb_012573_070 Hb_012573_070 Hb_003683_110--Hb_012573_070 Hb_003226_100 Hb_003226_100 Hb_003683_110--Hb_003226_100 Hb_007416_030 Hb_007416_030 Hb_003683_110--Hb_007416_030 Hb_000510_110 Hb_000510_110 Hb_001300_040--Hb_000510_110 Hb_002999_050 Hb_002999_050 Hb_001300_040--Hb_002999_050 Hb_010672_070 Hb_010672_070 Hb_001300_040--Hb_010672_070 Hb_001300_040--Hb_001780_040 Hb_000029_200 Hb_000029_200 Hb_001300_040--Hb_000029_200 Hb_011671_390 Hb_011671_390 Hb_004846_090--Hb_011671_390 Hb_004459_040 Hb_004459_040 Hb_004846_090--Hb_004459_040 Hb_004846_090--Hb_001780_040 Hb_000840_180 Hb_000840_180 Hb_004846_090--Hb_000840_180 Hb_028486_030 Hb_028486_030 Hb_004846_090--Hb_028486_030 Hb_001141_140 Hb_001141_140 Hb_006925_040--Hb_001141_140 Hb_000046_560 Hb_000046_560 Hb_006925_040--Hb_000046_560 Hb_002783_270 Hb_002783_270 Hb_006925_040--Hb_002783_270 Hb_003053_010 Hb_003053_010 Hb_006925_040--Hb_003053_010 Hb_007044_130 Hb_007044_130 Hb_006925_040--Hb_007044_130 Hb_000996_140 Hb_000996_140 Hb_006925_040--Hb_000996_140 Hb_002431_050 Hb_002431_050 Hb_010672_060--Hb_002431_050 Hb_005063_050 Hb_005063_050 Hb_010672_060--Hb_005063_050 Hb_000699_160 Hb_000699_160 Hb_010672_060--Hb_000699_160 Hb_003893_050 Hb_003893_050 Hb_010672_060--Hb_003893_050 Hb_000111_340 Hb_000111_340 Hb_010672_060--Hb_000111_340 Hb_007416_020 Hb_007416_020 Hb_010672_060--Hb_007416_020 Hb_001780_040--Hb_002768_030 Hb_002235_350 Hb_002235_350 Hb_001780_040--Hb_002235_350 Hb_000025_620 Hb_000025_620 Hb_001780_040--Hb_000025_620 Hb_000127_180 Hb_000127_180 Hb_001780_040--Hb_000127_180 Hb_001780_040--Hb_003226_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1025 3.546 12.485 7.56261 11.1855 7.61385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8867 41.1979 15.3204 5.31298 7.36303

CAGE analysis