Hb_000453_120

Information

Type -
Description -
Location Contig453: 60289-65374
Sequence    

Annotation

kegg
ID tcc:TCM_041032
description 20S proteasome alpha subunit G1
nr
ID XP_012075968.1
description PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
swissprot
ID O23715
description Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2
trembl
ID A0A067KQD6
description Proteasome subunit alpha type OS=Jatropha curcas GN=JCGZ_11060 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit alpha type-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43258: 60337-65248
cDNA
(Sanger)
(ID:Location)		 008_D05.ab1: 61152-65193 , 024_H12.ab1: 62069-65192

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_120 0.0 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
2 Hb_001484_070 0.0591891204 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001085_120 0.0614649524 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
4 Hb_001512_080 0.0695996258 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
5 Hb_002110_200 0.0723149424 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_000086_280 0.0775657552 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
7 Hb_003077_040 0.0845134359 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
8 Hb_000261_140 0.0854160629 - - -
9 Hb_005063_050 0.0873189571 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
10 Hb_000920_110 0.0886334371 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
11 Hb_000567_410 0.0888576928 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
12 Hb_001776_160 0.0901935168 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
13 Hb_000265_050 0.0915519006 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
14 Hb_000254_050 0.0922466577 - - hypothetical protein VITISV_010510 [Vitis vinifera]
15 Hb_002798_020 0.0942181963 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
16 Hb_001989_090 0.0950539452 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
17 Hb_004375_140 0.09622566 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
18 Hb_001360_070 0.0962775362 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001979_040 0.0962799159 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
20 Hb_003994_250 0.096390752 - - membrane associated ring finger 1,8, putative [Ricinus communis]

Gene co-expression network

sample Hb_000453_120 Hb_000453_120 Hb_001484_070 Hb_001484_070 Hb_000453_120--Hb_001484_070 Hb_001085_120 Hb_001085_120 Hb_000453_120--Hb_001085_120 Hb_001512_080 Hb_001512_080 Hb_000453_120--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_000453_120--Hb_002110_200 Hb_000086_280 Hb_000086_280 Hb_000453_120--Hb_000086_280 Hb_003077_040 Hb_003077_040 Hb_000453_120--Hb_003077_040 Hb_000920_110 Hb_000920_110 Hb_001484_070--Hb_000920_110 Hb_000261_140 Hb_000261_140 Hb_001484_070--Hb_000261_140 Hb_001979_040 Hb_001979_040 Hb_001484_070--Hb_001979_040 Hb_001484_070--Hb_001085_120 Hb_002056_050 Hb_002056_050 Hb_001484_070--Hb_002056_050 Hb_000103_010 Hb_000103_010 Hb_001085_120--Hb_000103_010 Hb_001085_120--Hb_001512_080 Hb_001776_160 Hb_001776_160 Hb_001085_120--Hb_001776_160 Hb_000417_360 Hb_000417_360 Hb_001085_120--Hb_000417_360 Hb_001512_080--Hb_002110_200 Hb_000224_140 Hb_000224_140 Hb_001512_080--Hb_000224_140 Hb_000254_050 Hb_000254_050 Hb_001512_080--Hb_000254_050 Hb_027654_050 Hb_027654_050 Hb_001512_080--Hb_027654_050 Hb_002110_200--Hb_000254_050 Hb_000789_230 Hb_000789_230 Hb_002110_200--Hb_000789_230 Hb_002110_200--Hb_001776_160 Hb_002110_200--Hb_027654_050 Hb_000086_280--Hb_001085_120 Hb_000086_280--Hb_001776_160 Hb_000638_250 Hb_000638_250 Hb_000086_280--Hb_000638_250 Hb_000086_280--Hb_000261_140 Hb_000240_090 Hb_000240_090 Hb_000086_280--Hb_000240_090 Hb_003077_040--Hb_001484_070 Hb_003077_040--Hb_000103_010 Hb_003077_040--Hb_001085_120 Hb_003077_040--Hb_000261_140 Hb_003077_040--Hb_000086_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.8127 21.0446 59.335 53.0952 50.6515 55.9883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.4614 193.556 115.19 48.0095 44.9626

CAGE analysis