Hb_000453_140

Information

Type -
Description -
Location Contig453: 73615-87866
Sequence    

Annotation

kegg
ID pop:POPTR_0009s02600g
description POPTRDRAFT_558178; hypothetical protein
nr
ID XP_002314240.1
description hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
swissprot
ID Q8W207
description COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2 PE=1 SV=1
trembl
ID A9P7W9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s02600g PE=2 SV=1
Gene Ontology
ID GO:0000502
description cop9 signalosome complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43260: 79897-88143 , PASA_asmbl_43261: 73302-88148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_140 0.0 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
2 Hb_003097_080 0.0806318279 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
3 Hb_027380_030 0.0825133918 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
4 Hb_002896_060 0.089516711 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
5 Hb_002092_100 0.0947227353 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
6 Hb_000076_260 0.0972761884 - - hypothetical protein GUITHDRAFT_149979 [Guillardia theta CCMP2712]
7 Hb_007456_010 0.0991409152 - - hypothetical protein L484_003540 [Morus notabilis]
8 Hb_006915_020 0.1004171114 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
9 Hb_000265_220 0.1056765835 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
10 Hb_000914_080 0.1075741314 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_002805_060 0.1088698082 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
12 Hb_001198_150 0.1105595608 - - hypothetical protein POPTR_0003s01280g [Populus trichocarpa]
13 Hb_001307_080 0.1128332137 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
14 Hb_001051_090 0.1142509316 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
15 Hb_003894_040 0.1153448408 - - nucleotide binding protein, putative [Ricinus communis]
16 Hb_000030_060 0.1179814873 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
17 Hb_000599_170 0.1187883317 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
18 Hb_011915_010 0.1190839527 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
19 Hb_002307_350 0.1226838389 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
20 Hb_002249_160 0.1237429075 - - -

Gene co-expression network

sample Hb_000453_140 Hb_000453_140 Hb_003097_080 Hb_003097_080 Hb_000453_140--Hb_003097_080 Hb_027380_030 Hb_027380_030 Hb_000453_140--Hb_027380_030 Hb_002896_060 Hb_002896_060 Hb_000453_140--Hb_002896_060 Hb_002092_100 Hb_002092_100 Hb_000453_140--Hb_002092_100 Hb_000076_260 Hb_000076_260 Hb_000453_140--Hb_000076_260 Hb_007456_010 Hb_007456_010 Hb_000453_140--Hb_007456_010 Hb_013818_030 Hb_013818_030 Hb_003097_080--Hb_013818_030 Hb_003097_080--Hb_027380_030 Hb_003097_080--Hb_000076_260 Hb_001504_040 Hb_001504_040 Hb_003097_080--Hb_001504_040 Hb_001307_080 Hb_001307_080 Hb_003097_080--Hb_001307_080 Hb_002805_060 Hb_002805_060 Hb_027380_030--Hb_002805_060 Hb_000599_170 Hb_000599_170 Hb_027380_030--Hb_000599_170 Hb_027380_030--Hb_002896_060 Hb_001051_090 Hb_001051_090 Hb_027380_030--Hb_001051_090 Hb_006915_020 Hb_006915_020 Hb_027380_030--Hb_006915_020 Hb_002896_060--Hb_001051_090 Hb_002896_060--Hb_002092_100 Hb_001952_120 Hb_001952_120 Hb_002896_060--Hb_001952_120 Hb_002896_060--Hb_002805_060 Hb_000156_160 Hb_000156_160 Hb_002092_100--Hb_000156_160 Hb_005053_010 Hb_005053_010 Hb_002092_100--Hb_005053_010 Hb_002092_100--Hb_002805_060 Hb_002092_100--Hb_027380_030 Hb_016734_090 Hb_016734_090 Hb_002092_100--Hb_016734_090 Hb_002681_170 Hb_002681_170 Hb_002092_100--Hb_002681_170 Hb_000076_260--Hb_002092_100 Hb_000661_020 Hb_000661_020 Hb_000076_260--Hb_000661_020 Hb_000735_100 Hb_000735_100 Hb_000076_260--Hb_000735_100 Hb_011915_010 Hb_011915_010 Hb_000076_260--Hb_011915_010 Hb_150651_030 Hb_150651_030 Hb_000076_260--Hb_150651_030 Hb_007456_010--Hb_027380_030 Hb_002307_350 Hb_002307_350 Hb_007456_010--Hb_002307_350 Hb_007456_010--Hb_006915_020 Hb_000021_020 Hb_000021_020 Hb_007456_010--Hb_000021_020 Hb_001198_150 Hb_001198_150 Hb_007456_010--Hb_001198_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.0535 31.5351 52.1966 25.6617 95.3212 43.914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1173 11.4841 9.80791 35.908 25.1262

CAGE analysis