Hb_000453_190

Information

Type transcription factor
Description TF Family: MYB
Location Contig453: 124250-134801
Sequence    

Annotation

kegg
ID pop:POPTR_0009s02380g
description POPTRDRAFT_768327; hypothetical protein
nr
ID XP_012075987.1
description PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
swissprot
ID Q0JIC2
description Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1
trembl
ID A0A067KE64
description MYB family protein OS=Jatropha curcas GN=JCGZ_11076 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor gamyb-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43268: 124595-133770 , PASA_asmbl_43271: 133794-134149
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_190 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
2 Hb_002783_120 0.0615670258 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
3 Hb_005695_060 0.0978280824 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
4 Hb_000345_530 0.101548538 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
5 Hb_007951_100 0.1031065451 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_001160_120 0.1055521566 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001001_020 0.1073889724 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
8 Hb_033594_020 0.1079444762 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
9 Hb_001040_040 0.1084047183 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
10 Hb_000923_040 0.1100795578 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
11 Hb_011915_010 0.1104484959 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
12 Hb_002675_040 0.113889096 - - ran-binding protein, putative [Ricinus communis]
13 Hb_030827_030 0.1159876521 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
14 Hb_000805_260 0.1189384068 - - PREDICTED: uncharacterized protein LOC105650295 isoform X1 [Jatropha curcas]
15 Hb_000140_330 0.1195990428 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
16 Hb_002612_010 0.1197354328 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
17 Hb_007943_120 0.1199743841 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
18 Hb_000104_080 0.1204976795 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
19 Hb_002249_160 0.120554445 - - -
20 Hb_000976_080 0.1206848926 - - hypothetical protein VITISV_034376 [Vitis vinifera]

Gene co-expression network

sample Hb_000453_190 Hb_000453_190 Hb_002783_120 Hb_002783_120 Hb_000453_190--Hb_002783_120 Hb_005695_060 Hb_005695_060 Hb_000453_190--Hb_005695_060 Hb_000345_530 Hb_000345_530 Hb_000453_190--Hb_000345_530 Hb_007951_100 Hb_007951_100 Hb_000453_190--Hb_007951_100 Hb_001160_120 Hb_001160_120 Hb_000453_190--Hb_001160_120 Hb_001001_020 Hb_001001_020 Hb_000453_190--Hb_001001_020 Hb_002783_120--Hb_005695_060 Hb_000976_080 Hb_000976_080 Hb_002783_120--Hb_000976_080 Hb_002783_120--Hb_001001_020 Hb_011915_010 Hb_011915_010 Hb_002783_120--Hb_011915_010 Hb_002783_120--Hb_001160_120 Hb_005695_060--Hb_001001_020 Hb_005695_060--Hb_000976_080 Hb_152453_010 Hb_152453_010 Hb_005695_060--Hb_152453_010 Hb_005846_020 Hb_005846_020 Hb_005695_060--Hb_005846_020 Hb_000923_040 Hb_000923_040 Hb_000345_530--Hb_000923_040 Hb_000104_080 Hb_000104_080 Hb_000345_530--Hb_000104_080 Hb_001040_040 Hb_001040_040 Hb_000345_530--Hb_001040_040 Hb_030827_030 Hb_030827_030 Hb_000345_530--Hb_030827_030 Hb_002249_160 Hb_002249_160 Hb_000345_530--Hb_002249_160 Hb_000345_530--Hb_000976_080 Hb_006452_160 Hb_006452_160 Hb_007951_100--Hb_006452_160 Hb_000140_330 Hb_000140_330 Hb_007951_100--Hb_000140_330 Hb_002805_170 Hb_002805_170 Hb_007951_100--Hb_002805_170 Hb_002301_270 Hb_002301_270 Hb_007951_100--Hb_002301_270 Hb_156144_030 Hb_156144_030 Hb_007951_100--Hb_156144_030 Hb_007943_120 Hb_007943_120 Hb_007951_100--Hb_007943_120 Hb_001050_010 Hb_001050_010 Hb_001160_120--Hb_001050_010 Hb_001160_120--Hb_001040_040 Hb_001160_120--Hb_011915_010 Hb_001160_120--Hb_001001_020 Hb_011609_170 Hb_011609_170 Hb_001160_120--Hb_011609_170 Hb_001001_020--Hb_000976_080 Hb_018790_070 Hb_018790_070 Hb_001001_020--Hb_018790_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3994 5.56704 8.46796 1.62224 13.7141 9.50254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.49707 2.63358 4.72095 2.11308 2.69215

CAGE analysis