Hb_000453_210

Information

Type -
Description -
Location Contig453: 146703-148452
Sequence    

Annotation

kegg
ID pvu:PHAVU_006G019800g
description hypothetical protein
nr
ID XP_007146187.1
description hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
swissprot
ID Q84WM9
description Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2
trembl
ID V7BNN2
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G019800g PE=3 SV=1
Gene Ontology
ID GO:0005794
description elongation factor 1-beta 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43273: 146785-147606 , PASA_asmbl_43274: 147314-147549 , PASA_asmbl_43276: 147913-148447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_210 0.0 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
2 Hb_001143_010 0.1244241929 - - -
3 Hb_001495_060 0.1540596622 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
4 Hb_002685_180 0.1626787343 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
5 Hb_008667_050 0.165938311 - - PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
6 Hb_003209_030 0.1751539576 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
7 Hb_001047_140 0.1769370791 - - -
8 Hb_004502_080 0.1797280992 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
9 Hb_004958_050 0.1979080972 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
10 Hb_000331_320 0.1993140727 - - -
11 Hb_000122_040 0.2008682407 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
12 Hb_002233_110 0.2050803837 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
13 Hb_001864_030 0.2084707113 - - thioredoxin h [Hevea brasiliensis]
14 Hb_150299_030 0.2099516342 - - conserved hypothetical protein [Ricinus communis]
15 Hb_019033_010 0.2130540873 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
16 Hb_003592_070 0.2140779701 - - -
17 Hb_000331_310 0.2145507088 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
18 Hb_002835_220 0.2153322241 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
19 Hb_011242_030 0.2153594393 - - -
20 Hb_004048_010 0.2158246275 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]

Gene co-expression network

sample Hb_000453_210 Hb_000453_210 Hb_001143_010 Hb_001143_010 Hb_000453_210--Hb_001143_010 Hb_001495_060 Hb_001495_060 Hb_000453_210--Hb_001495_060 Hb_002685_180 Hb_002685_180 Hb_000453_210--Hb_002685_180 Hb_008667_050 Hb_008667_050 Hb_000453_210--Hb_008667_050 Hb_003209_030 Hb_003209_030 Hb_000453_210--Hb_003209_030 Hb_001047_140 Hb_001047_140 Hb_000453_210--Hb_001047_140 Hb_000861_050 Hb_000861_050 Hb_001143_010--Hb_000861_050 Hb_150299_030 Hb_150299_030 Hb_001143_010--Hb_150299_030 Hb_005410_030 Hb_005410_030 Hb_001143_010--Hb_005410_030 Hb_004055_060 Hb_004055_060 Hb_001143_010--Hb_004055_060 Hb_004958_050 Hb_004958_050 Hb_001143_010--Hb_004958_050 Hb_000529_240 Hb_000529_240 Hb_001495_060--Hb_000529_240 Hb_001495_060--Hb_002685_180 Hb_001495_060--Hb_003209_030 Hb_001495_060--Hb_001143_010 Hb_001495_060--Hb_001047_140 Hb_007904_090 Hb_007904_090 Hb_002685_180--Hb_007904_090 Hb_011242_030 Hb_011242_030 Hb_002685_180--Hb_011242_030 Hb_000376_160 Hb_000376_160 Hb_002685_180--Hb_000376_160 Hb_019033_010 Hb_019033_010 Hb_002685_180--Hb_019033_010 Hb_000331_320 Hb_000331_320 Hb_008667_050--Hb_000331_320 Hb_008667_050--Hb_001047_140 Hb_008667_050--Hb_003209_030 Hb_005690_020 Hb_005690_020 Hb_008667_050--Hb_005690_020 Hb_008667_050--Hb_000529_240 Hb_003209_030--Hb_000331_320 Hb_003209_030--Hb_000529_240 Hb_003209_030--Hb_001047_140 Hb_001047_140--Hb_000331_320 Hb_001864_030 Hb_001864_030 Hb_001047_140--Hb_001864_030 Hb_000331_310 Hb_000331_310 Hb_001047_140--Hb_000331_310 Hb_004502_080 Hb_004502_080 Hb_001047_140--Hb_004502_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
245.409 151.02 23.2357 40.0453 260.287 174.248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1008.94 831.014 33.4605 60.2858 17.0172

CAGE analysis