Hb_000453_250

Information

Type -
Description -
Location Contig453: 184194-186152
Sequence    

Annotation

kegg
ID rcu:RCOM_0784680
description hypothetical protein
nr
ID XP_012075995.1
description PREDICTED: uncharacterized protein LOC105637185 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11088 PE=4 SV=1
Gene Ontology
ID GO:0003746
description ubiquitin-associated domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43282: 183848-187537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_250 0.0 - - PREDICTED: uncharacterized protein LOC105637185 [Jatropha curcas]
2 Hb_000028_130 0.0745721629 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
3 Hb_004182_050 0.0749482889 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
4 Hb_000174_270 0.0749967285 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
5 Hb_031527_030 0.0753215846 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
6 Hb_001417_030 0.0766066691 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
7 Hb_004019_120 0.0769478272 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
8 Hb_000537_050 0.0784163801 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
9 Hb_000313_120 0.0785107178 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
10 Hb_001628_070 0.0785413166 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_000230_260 0.0787335453 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
12 Hb_071130_010 0.0806846996 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
13 Hb_004030_080 0.0810409765 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
14 Hb_002890_130 0.0813579014 - - tip120, putative [Ricinus communis]
15 Hb_010142_020 0.0818857734 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012055_040 0.0818966921 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
17 Hb_001217_050 0.0820797903 - - actin binding protein, putative [Ricinus communis]
18 Hb_000984_170 0.0830715609 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
19 Hb_000667_030 0.083430019 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
20 Hb_010515_020 0.0835167647 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]

Gene co-expression network

sample Hb_000453_250 Hb_000453_250 Hb_000028_130 Hb_000028_130 Hb_000453_250--Hb_000028_130 Hb_004182_050 Hb_004182_050 Hb_000453_250--Hb_004182_050 Hb_000174_270 Hb_000174_270 Hb_000453_250--Hb_000174_270 Hb_031527_030 Hb_031527_030 Hb_000453_250--Hb_031527_030 Hb_001417_030 Hb_001417_030 Hb_000453_250--Hb_001417_030 Hb_004019_120 Hb_004019_120 Hb_000453_250--Hb_004019_120 Hb_031042_050 Hb_031042_050 Hb_000028_130--Hb_031042_050 Hb_001635_120 Hb_001635_120 Hb_000028_130--Hb_001635_120 Hb_000017_220 Hb_000017_220 Hb_000028_130--Hb_000017_220 Hb_001716_020 Hb_001716_020 Hb_000028_130--Hb_001716_020 Hb_001473_110 Hb_001473_110 Hb_000028_130--Hb_001473_110 Hb_003494_020 Hb_003494_020 Hb_000028_130--Hb_003494_020 Hb_012760_100 Hb_012760_100 Hb_004182_050--Hb_012760_100 Hb_001814_030 Hb_001814_030 Hb_004182_050--Hb_001814_030 Hb_012395_140 Hb_012395_140 Hb_004182_050--Hb_012395_140 Hb_001550_060 Hb_001550_060 Hb_004182_050--Hb_001550_060 Hb_004182_050--Hb_000174_270 Hb_000412_010 Hb_000412_010 Hb_004182_050--Hb_000412_010 Hb_000174_270--Hb_003494_020 Hb_001999_290 Hb_001999_290 Hb_000174_270--Hb_001999_290 Hb_000174_270--Hb_000028_130 Hb_062226_070 Hb_062226_070 Hb_000174_270--Hb_062226_070 Hb_000037_190 Hb_000037_190 Hb_000174_270--Hb_000037_190 Hb_000174_270--Hb_001635_120 Hb_012286_040 Hb_012286_040 Hb_031527_030--Hb_012286_040 Hb_012055_040 Hb_012055_040 Hb_031527_030--Hb_012055_040 Hb_000003_100 Hb_000003_100 Hb_031527_030--Hb_000003_100 Hb_004037_020 Hb_004037_020 Hb_031527_030--Hb_004037_020 Hb_000089_180 Hb_000089_180 Hb_031527_030--Hb_000089_180 Hb_011849_040 Hb_011849_040 Hb_031527_030--Hb_011849_040 Hb_000111_290 Hb_000111_290 Hb_001417_030--Hb_000111_290 Hb_003913_070 Hb_003913_070 Hb_001417_030--Hb_003913_070 Hb_000792_010 Hb_000792_010 Hb_001417_030--Hb_000792_010 Hb_002518_260 Hb_002518_260 Hb_001417_030--Hb_002518_260 Hb_003411_040 Hb_003411_040 Hb_001417_030--Hb_003411_040 Hb_000614_240 Hb_000614_240 Hb_001417_030--Hb_000614_240 Hb_009296_040 Hb_009296_040 Hb_004019_120--Hb_009296_040 Hb_000230_260 Hb_000230_260 Hb_004019_120--Hb_000230_260 Hb_000556_220 Hb_000556_220 Hb_004019_120--Hb_000556_220 Hb_001377_350 Hb_001377_350 Hb_004019_120--Hb_001377_350 Hb_001195_470 Hb_001195_470 Hb_004019_120--Hb_001195_470 Hb_000140_210 Hb_000140_210 Hb_004019_120--Hb_000140_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.9576 17.6154 6.7321 16.4239 12.8709 10.4613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.67618 8.39478 11.0889 15.9794 17.3465

CAGE analysis