Hb_000453_260

Information

Type -
Description -
Location Contig453: 191783-195638
Sequence    

Annotation

kegg
ID vvi:100266771
description armadillo repeat-containing protein 7
nr
ID XP_002270403.1
description PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Vitis vinifera]
swissprot
ID Q3UJZ3
description Armadillo repeat-containing protein 7 OS=Mus musculus GN=Armc7 PE=2 SV=2
trembl
ID F6HFW7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0079g00520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43284: 191939-192899 , PASA_asmbl_43285: 194055-195042 , PASA_asmbl_43286: 192901-195150 , PASA_asmbl_43287: 195281-195669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_260 0.0 - - PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Vitis vinifera]
2 Hb_002197_030 0.1000880342 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]
3 Hb_000995_050 0.1234487798 - - 40S ribosomal protein S17C [Hevea brasiliensis]
4 Hb_015057_010 0.1253831318 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
5 Hb_123202_010 0.1300142417 - - thioredoxin h [Hevea brasiliensis]
6 Hb_004242_100 0.134872721 - - RNA binding protein, putative [Ricinus communis]
7 Hb_000329_770 0.1373085684 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004453_150 0.1438029528 - - BnaC02g13240D [Brassica napus]
9 Hb_002263_010 0.1440679505 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
10 Hb_004072_010 0.1446389808 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
11 Hb_102156_010 0.1473335796 - - conserved hypothetical protein [Ricinus communis]
12 Hb_120221_010 0.1489174679 - - -
13 Hb_034585_030 0.149598291 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
14 Hb_010298_010 0.1498212321 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
15 Hb_006252_010 0.1503135619 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
16 Hb_004116_040 0.1512884278 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]
17 Hb_153054_010 0.1517388013 - - PREDICTED: metal tolerance protein 11-like [Populus euphratica]
18 Hb_000003_350 0.153096662 - - hypothetical protein POPTR_1155s00200g, partial [Populus trichocarpa]
19 Hb_010261_020 0.1541312983 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
20 Hb_028639_050 0.1547165989 - - Anopheles gambiae str. PEST AGAP012660-PA [Anopheles gambiae str. PEST]

Gene co-expression network

sample Hb_000453_260 Hb_000453_260 Hb_002197_030 Hb_002197_030 Hb_000453_260--Hb_002197_030 Hb_000995_050 Hb_000995_050 Hb_000453_260--Hb_000995_050 Hb_015057_010 Hb_015057_010 Hb_000453_260--Hb_015057_010 Hb_123202_010 Hb_123202_010 Hb_000453_260--Hb_123202_010 Hb_004242_100 Hb_004242_100 Hb_000453_260--Hb_004242_100 Hb_000329_770 Hb_000329_770 Hb_000453_260--Hb_000329_770 Hb_006252_010 Hb_006252_010 Hb_002197_030--Hb_006252_010 Hb_009543_030 Hb_009543_030 Hb_002197_030--Hb_009543_030 Hb_002023_020 Hb_002023_020 Hb_002197_030--Hb_002023_020 Hb_000608_180 Hb_000608_180 Hb_002197_030--Hb_000608_180 Hb_000364_150 Hb_000364_150 Hb_002197_030--Hb_000364_150 Hb_120221_010 Hb_120221_010 Hb_000995_050--Hb_120221_010 Hb_000156_130 Hb_000156_130 Hb_000995_050--Hb_000156_130 Hb_002259_030 Hb_002259_030 Hb_000995_050--Hb_002259_030 Hb_000510_090 Hb_000510_090 Hb_000995_050--Hb_000510_090 Hb_005916_030 Hb_005916_030 Hb_000995_050--Hb_005916_030 Hb_004453_150 Hb_004453_150 Hb_015057_010--Hb_004453_150 Hb_000963_190 Hb_000963_190 Hb_015057_010--Hb_000963_190 Hb_001454_140 Hb_001454_140 Hb_015057_010--Hb_001454_140 Hb_001235_070 Hb_001235_070 Hb_015057_010--Hb_001235_070 Hb_000380_010 Hb_000380_010 Hb_015057_010--Hb_000380_010 Hb_009558_020 Hb_009558_020 Hb_015057_010--Hb_009558_020 Hb_010298_010 Hb_010298_010 Hb_123202_010--Hb_010298_010 Hb_123202_010--Hb_000329_770 Hb_006602_010 Hb_006602_010 Hb_123202_010--Hb_006602_010 Hb_004735_010 Hb_004735_010 Hb_123202_010--Hb_004735_010 Hb_005965_010 Hb_005965_010 Hb_123202_010--Hb_005965_010 Hb_004072_010 Hb_004072_010 Hb_004242_100--Hb_004072_010 Hb_005941_010 Hb_005941_010 Hb_004242_100--Hb_005941_010 Hb_005245_090 Hb_005245_090 Hb_004242_100--Hb_005245_090 Hb_003050_040 Hb_003050_040 Hb_004242_100--Hb_003050_040 Hb_002263_010 Hb_002263_010 Hb_004242_100--Hb_002263_010 Hb_000705_260 Hb_000705_260 Hb_004242_100--Hb_000705_260 Hb_000329_770--Hb_015057_010 Hb_011016_090 Hb_011016_090 Hb_000329_770--Hb_011016_090 Hb_006502_080 Hb_006502_080 Hb_000329_770--Hb_006502_080 Hb_002259_150 Hb_002259_150 Hb_000329_770--Hb_002259_150 Hb_000329_770--Hb_000380_010 Hb_028639_050 Hb_028639_050 Hb_000329_770--Hb_028639_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.64121 2.2832 0.430724 2.60606 7.31339 28.6232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4133 9.2808 7.69639 7.77569 0.522907

CAGE analysis