Hb_000453_300

Information

Type -
Description -
Location Contig453: 206366-208517
Sequence    

Annotation

kegg
ID rcu:RCOM_0785060
description Cysteine proteinase inhibitor, putative
nr
ID ACZ02398.1
description latex cystatin [Hevea brasiliensis]
swissprot
ID Q06445
description Cysteine proteinase inhibitor OS=Vigna unguiculata PE=3 SV=1
trembl
ID E8Z9H3
description Latex cystatin OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0004869
description cysteine proteinase inhibitor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43289: 206736-208512 , PASA_asmbl_43290: 202111-208787 , PASA_asmbl_43291: 202111-208521 , PASA_asmbl_43292: 206445-208630
cDNA
(Sanger)
(ID:Location)		 002_L21.ab1: 202117-208521 , 003_G04.ab1: 206580-208521 , 006_B17.ab1: 206567-208630 , 007_E09.ab1: 202117-208521 , 013_C20.ab1: 202117-208521 , 015_E03.ab1: 206483-208512 , 015_O19.ab1: 206572-208512 , 024_H24.ab1: 206462-208519 , 027_N03.ab1: 202117-208521 , 034_B02.ab1: 206445-208521 , 035_I03.ab1: 206462-208512 , 035_I22.ab1: 206595-208512 , 036_H10.ab1: 202196-208787 , 041_F06.ab1: 206571-208486 , 041_O05.ab1: 206581-208522 , 042_F09.ab1: 207465-208512 , 043_E12.ab1: 202117-208521 , 043_N22.ab1: 206579-208512 , 052_G03.ab1: 202116-208521

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_300 0.0 - - latex cystatin [Hevea brasiliensis]
2 Hb_012799_020 0.1407149438 - - metal ion binding protein, putative [Ricinus communis]
3 Hb_001507_070 0.1462881154 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000281_230 0.1485571134 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
5 Hb_104010_010 0.1496014886 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
6 Hb_004209_030 0.1529844228 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
7 Hb_003050_070 0.1583293619 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000613_160 0.1587178179 - - coated vesicle membrane protein, putative [Ricinus communis]
9 Hb_000215_180 0.1596593841 - - hypothetical protein 17 [Hevea brasiliensis]
10 Hb_000235_010 0.1596609456 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
11 Hb_004218_210 0.1622131242 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
12 Hb_003211_050 0.1631425423 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
13 Hb_000792_120 0.1713111736 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
14 Hb_000106_100 0.1720059821 - - -
15 Hb_002260_020 0.1736587438 - - -
16 Hb_012022_100 0.17557593 - - CPRD49 family protein [Populus trichocarpa]
17 Hb_001377_380 0.1770195148 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
18 Hb_004635_060 0.1790053117 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
19 Hb_080477_060 0.1792937797 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011004_010 0.179555276 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000453_300 Hb_000453_300 Hb_012799_020 Hb_012799_020 Hb_000453_300--Hb_012799_020 Hb_001507_070 Hb_001507_070 Hb_000453_300--Hb_001507_070 Hb_000281_230 Hb_000281_230 Hb_000453_300--Hb_000281_230 Hb_104010_010 Hb_104010_010 Hb_000453_300--Hb_104010_010 Hb_004209_030 Hb_004209_030 Hb_000453_300--Hb_004209_030 Hb_003050_070 Hb_003050_070 Hb_000453_300--Hb_003050_070 Hb_107504_010 Hb_107504_010 Hb_012799_020--Hb_107504_010 Hb_001936_140 Hb_001936_140 Hb_012799_020--Hb_001936_140 Hb_002918_040 Hb_002918_040 Hb_012799_020--Hb_002918_040 Hb_012799_020--Hb_004209_030 Hb_000792_120 Hb_000792_120 Hb_012799_020--Hb_000792_120 Hb_000742_270 Hb_000742_270 Hb_001507_070--Hb_000742_270 Hb_011004_010 Hb_011004_010 Hb_001507_070--Hb_011004_010 Hb_003371_100 Hb_003371_100 Hb_001507_070--Hb_003371_100 Hb_148121_010 Hb_148121_010 Hb_001507_070--Hb_148121_010 Hb_000215_180 Hb_000215_180 Hb_001507_070--Hb_000215_180 Hb_000032_040 Hb_000032_040 Hb_001507_070--Hb_000032_040 Hb_001159_200 Hb_001159_200 Hb_000281_230--Hb_001159_200 Hb_004635_060 Hb_004635_060 Hb_000281_230--Hb_004635_060 Hb_001369_400 Hb_001369_400 Hb_000281_230--Hb_001369_400 Hb_000819_070 Hb_000819_070 Hb_000281_230--Hb_000819_070 Hb_000318_490 Hb_000318_490 Hb_000281_230--Hb_000318_490 Hb_004223_260 Hb_004223_260 Hb_000281_230--Hb_004223_260 Hb_104010_010--Hb_003050_070 Hb_001741_090 Hb_001741_090 Hb_104010_010--Hb_001741_090 Hb_104010_010--Hb_001507_070 Hb_104010_010--Hb_148121_010 Hb_104010_010--Hb_011004_010 Hb_001434_070 Hb_001434_070 Hb_004209_030--Hb_001434_070 Hb_001377_380 Hb_001377_380 Hb_004209_030--Hb_001377_380 Hb_000260_200 Hb_000260_200 Hb_004209_030--Hb_000260_200 Hb_004545_130 Hb_004545_130 Hb_004209_030--Hb_004545_130 Hb_000635_080 Hb_000635_080 Hb_004209_030--Hb_000635_080 Hb_000780_210 Hb_000780_210 Hb_004209_030--Hb_000780_210 Hb_000714_010 Hb_000714_010 Hb_003050_070--Hb_000714_010 Hb_003211_050 Hb_003211_050 Hb_003050_070--Hb_003211_050 Hb_000567_280 Hb_000567_280 Hb_003050_070--Hb_000567_280 Hb_010166_020 Hb_010166_020 Hb_003050_070--Hb_010166_020 Hb_149683_010 Hb_149683_010 Hb_003050_070--Hb_149683_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
117.797 16.5017 46.5249 99.6717 50.3752 109.529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1903.61 1308.57 655.563 166.388 119.359

CAGE analysis