Hb_000454_030

Information

Type -
Description -
Location Contig454: 4809-7876
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_030 0.0 - - -
2 Hb_000175_530 0.107025376 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
3 Hb_000580_060 0.1363532523 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
4 Hb_000441_230 0.1426167181 - - unnamed protein product [Coffea canephora]
5 Hb_001146_070 0.1440482638 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
6 Hb_000329_540 0.1520473902 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
7 Hb_003226_170 0.1584611833 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
8 Hb_000352_130 0.1599904607 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
9 Hb_064201_010 0.1642182251 - - hypothetical protein RCOM_1685970 [Ricinus communis]
10 Hb_005271_030 0.1645735609 - - copper-transporting atpase p-type, putative [Ricinus communis]
11 Hb_045502_010 0.1765032131 - - prefoldin subunit 1 [Jatropha curcas]
12 Hb_003376_170 0.1774714528 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
13 Hb_003360_020 0.180475006 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
14 Hb_001178_020 0.1839805657 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]
15 Hb_010290_020 0.185540191 - - RAB6-interacting protein, putative [Ricinus communis]
16 Hb_000038_150 0.18591872 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
17 Hb_005568_070 0.1859687202 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
18 Hb_001017_100 0.1861642504 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
19 Hb_005217_020 0.191589331 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
20 Hb_003859_010 0.1952302801 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]

Gene co-expression network

sample Hb_000454_030 Hb_000454_030 Hb_000175_530 Hb_000175_530 Hb_000454_030--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_000454_030--Hb_000580_060 Hb_000441_230 Hb_000441_230 Hb_000454_030--Hb_000441_230 Hb_001146_070 Hb_001146_070 Hb_000454_030--Hb_001146_070 Hb_000329_540 Hb_000329_540 Hb_000454_030--Hb_000329_540 Hb_003226_170 Hb_003226_170 Hb_000454_030--Hb_003226_170 Hb_000175_530--Hb_001146_070 Hb_000175_530--Hb_000329_540 Hb_000175_530--Hb_000441_230 Hb_005568_070 Hb_005568_070 Hb_000175_530--Hb_005568_070 Hb_000175_530--Hb_000580_060 Hb_010290_020 Hb_010290_020 Hb_000580_060--Hb_010290_020 Hb_000580_060--Hb_000441_230 Hb_004307_040 Hb_004307_040 Hb_000580_060--Hb_004307_040 Hb_003360_020 Hb_003360_020 Hb_000580_060--Hb_003360_020 Hb_000580_060--Hb_005568_070 Hb_000441_230--Hb_000329_540 Hb_003540_140 Hb_003540_140 Hb_000441_230--Hb_003540_140 Hb_002506_110 Hb_002506_110 Hb_000441_230--Hb_002506_110 Hb_000441_230--Hb_003226_170 Hb_005271_030 Hb_005271_030 Hb_000441_230--Hb_005271_030 Hb_001146_070--Hb_005271_030 Hb_029464_010 Hb_029464_010 Hb_001146_070--Hb_029464_010 Hb_064201_010 Hb_064201_010 Hb_001146_070--Hb_064201_010 Hb_007158_030 Hb_007158_030 Hb_001146_070--Hb_007158_030 Hb_001017_100 Hb_001017_100 Hb_001146_070--Hb_001017_100 Hb_000329_540--Hb_003540_140 Hb_000156_030 Hb_000156_030 Hb_000329_540--Hb_000156_030 Hb_000329_540--Hb_005568_070 Hb_000329_540--Hb_000580_060 Hb_061256_030 Hb_061256_030 Hb_003226_170--Hb_061256_030 Hb_003673_020 Hb_003673_020 Hb_003226_170--Hb_003673_020 Hb_002837_070 Hb_002837_070 Hb_003226_170--Hb_002837_070 Hb_001846_080 Hb_001846_080 Hb_003226_170--Hb_001846_080 Hb_174865_050 Hb_174865_050 Hb_003226_170--Hb_174865_050 Hb_005016_150 Hb_005016_150 Hb_003226_170--Hb_005016_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1123 0.398604 0.371918 0.559707 12.5748 15.2875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.85269 2.49618 0.316825 0.184859 0

CAGE analysis