Hb_000454_040

Information

Type -
Description -
Location Contig454: 11110-19101
Sequence    

Annotation

kegg
ID pop:POPTR_0009s12740g
description POPTRDRAFT_821135; kinesin motor family protein
nr
ID XP_012084438.1
description PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
swissprot
ID Q8S950
description Kinesin-like protein NACK1 OS=Nicotiana tabacum GN=NACK1 PE=1 SV=1
trembl
ID A0A067K5W2
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_19645 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein nack1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43329: 10966-11556 , PASA_asmbl_43331: 12162-12455 , PASA_asmbl_43332: 13067-13404 , PASA_asmbl_43333: 12761-13798 , PASA_asmbl_43334: 13799-13914 , PASA_asmbl_43335: 13915-19038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_040 0.0 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
2 Hb_001488_190 0.1453581507 - - alpha-amylase, putative [Ricinus communis]
3 Hb_005622_020 0.2020200433 - - PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]
4 Hb_004724_170 0.2149276462 - - PREDICTED: rho GTPase-activating protein 1 [Jatropha curcas]
5 Hb_002028_180 0.2194298935 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_007534_060 0.2292306508 - - protein binding protein, putative [Ricinus communis]
7 Hb_000312_050 0.2307277613 - - transcription factor, putative [Ricinus communis]
8 Hb_000809_240 0.2364537788 - - hypothetical protein POPTR_0007s11280g [Populus trichocarpa]
9 Hb_004041_050 0.2376982713 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
10 Hb_008279_030 0.239886406 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000977_170 0.2407986935 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002972_030 0.241322888 - - protein with unknown function [Ricinus communis]
13 Hb_048476_030 0.243483389 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
14 Hb_119044_010 0.244759149 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
15 Hb_003197_010 0.2459364571 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004218_300 0.2465532316 - - hypothetical protein JCGZ_24534 [Jatropha curcas]
17 Hb_163145_030 0.2471102746 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
18 Hb_000424_040 0.247643703 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
19 Hb_001017_130 0.2492102152 - - hypothetical protein POPTR_0010s06070g [Populus trichocarpa]
20 Hb_003728_090 0.2523706058 - - hypothetical protein JCGZ_12701 [Jatropha curcas]

Gene co-expression network

sample Hb_000454_040 Hb_000454_040 Hb_001488_190 Hb_001488_190 Hb_000454_040--Hb_001488_190 Hb_005622_020 Hb_005622_020 Hb_000454_040--Hb_005622_020 Hb_004724_170 Hb_004724_170 Hb_000454_040--Hb_004724_170 Hb_002028_180 Hb_002028_180 Hb_000454_040--Hb_002028_180 Hb_007534_060 Hb_007534_060 Hb_000454_040--Hb_007534_060 Hb_000312_050 Hb_000312_050 Hb_000454_040--Hb_000312_050 Hb_001488_190--Hb_007534_060 Hb_001488_190--Hb_005622_020 Hb_003197_010 Hb_003197_010 Hb_001488_190--Hb_003197_010 Hb_003813_180 Hb_003813_180 Hb_001488_190--Hb_003813_180 Hb_005470_030 Hb_005470_030 Hb_001488_190--Hb_005470_030 Hb_000108_240 Hb_000108_240 Hb_005622_020--Hb_000108_240 Hb_004041_050 Hb_004041_050 Hb_005622_020--Hb_004041_050 Hb_006634_100 Hb_006634_100 Hb_005622_020--Hb_006634_100 Hb_003050_360 Hb_003050_360 Hb_005622_020--Hb_003050_360 Hb_002028_110 Hb_002028_110 Hb_005622_020--Hb_002028_110 Hb_000193_340 Hb_000193_340 Hb_005622_020--Hb_000193_340 Hb_000979_260 Hb_000979_260 Hb_004724_170--Hb_000979_260 Hb_004724_170--Hb_004041_050 Hb_097335_010 Hb_097335_010 Hb_004724_170--Hb_097335_010 Hb_011242_010 Hb_011242_010 Hb_004724_170--Hb_011242_010 Hb_001180_010 Hb_001180_010 Hb_004724_170--Hb_001180_010 Hb_001433_150 Hb_001433_150 Hb_004724_170--Hb_001433_150 Hb_119044_010 Hb_119044_010 Hb_002028_180--Hb_119044_010 Hb_002817_040 Hb_002817_040 Hb_002028_180--Hb_002817_040 Hb_000612_090 Hb_000612_090 Hb_002028_180--Hb_000612_090 Hb_000805_010 Hb_000805_010 Hb_002028_180--Hb_000805_010 Hb_003935_070 Hb_003935_070 Hb_002028_180--Hb_003935_070 Hb_000616_030 Hb_000616_030 Hb_002028_180--Hb_000616_030 Hb_000077_360 Hb_000077_360 Hb_007534_060--Hb_000077_360 Hb_069355_010 Hb_069355_010 Hb_007534_060--Hb_069355_010 Hb_001289_020 Hb_001289_020 Hb_007534_060--Hb_001289_020 Hb_000477_040 Hb_000477_040 Hb_007534_060--Hb_000477_040 Hb_000032_450 Hb_000032_450 Hb_007534_060--Hb_000032_450 Hb_000186_170 Hb_000186_170 Hb_000312_050--Hb_000186_170 Hb_078897_010 Hb_078897_010 Hb_000312_050--Hb_078897_010 Hb_006472_080 Hb_006472_080 Hb_000312_050--Hb_006472_080 Hb_001711_050 Hb_001711_050 Hb_000312_050--Hb_001711_050 Hb_001053_060 Hb_001053_060 Hb_000312_050--Hb_001053_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.75467 5.53823 37.5552 30.53 0.308761 2.25988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.304005 0.294448 32.1334 6.29606 54.2093

CAGE analysis