Hb_000454_070

Information

Type -
Description -
Location Contig454: 33394-35566
Sequence    

Annotation

kegg
ID csv:101214509
description 30S ribosomal protein S31, mitochondrial-like
nr
ID XP_011658557.1
description PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
swissprot
ID P47909
description 30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0528100 PE=3 SV=2
trembl
ID A0A0A0K141
description 30S ribosomal protein S31, mitochondrial OS=Cucumis sativus GN=Csa_7G006280 PE=4 SV=1
Gene Ontology
ID GO:0005739
description 30s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_070 0.0 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
2 Hb_000432_050 0.1333269668 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
3 Hb_000200_290 0.1428174516 - - PREDICTED: elongator complex protein 2 isoform X1 [Jatropha curcas]
4 Hb_048476_050 0.1524237521 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
5 Hb_005000_070 0.1550510758 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
6 Hb_001538_140 0.1574258992 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
7 Hb_000363_200 0.158290407 - - 40S ribosomal protein S8, putative [Ricinus communis]
8 Hb_116898_010 0.1584491099 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
9 Hb_000196_080 0.159406295 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
10 Hb_005839_110 0.1597251504 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
11 Hb_000162_140 0.1617518821 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
12 Hb_000723_190 0.1618055177 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
13 Hb_029510_040 0.1622157996 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
14 Hb_004429_150 0.1635027636 - - -
15 Hb_027380_180 0.1646969089 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
16 Hb_021443_080 0.1668975841 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
17 Hb_009113_070 0.1669403235 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
18 Hb_001575_020 0.1671550282 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000616_040 0.1677735979 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
20 Hb_003581_260 0.1679007449 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]

Gene co-expression network

sample Hb_000454_070 Hb_000454_070 Hb_000432_050 Hb_000432_050 Hb_000454_070--Hb_000432_050 Hb_000200_290 Hb_000200_290 Hb_000454_070--Hb_000200_290 Hb_048476_050 Hb_048476_050 Hb_000454_070--Hb_048476_050 Hb_005000_070 Hb_005000_070 Hb_000454_070--Hb_005000_070 Hb_001538_140 Hb_001538_140 Hb_000454_070--Hb_001538_140 Hb_000363_200 Hb_000363_200 Hb_000454_070--Hb_000363_200 Hb_000432_050--Hb_001538_140 Hb_029510_040 Hb_029510_040 Hb_000432_050--Hb_029510_040 Hb_005839_110 Hb_005839_110 Hb_000432_050--Hb_005839_110 Hb_002756_020 Hb_002756_020 Hb_000432_050--Hb_002756_020 Hb_009314_010 Hb_009314_010 Hb_000432_050--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000432_050--Hb_000771_130 Hb_001153_020 Hb_001153_020 Hb_000200_290--Hb_001153_020 Hb_000616_040 Hb_000616_040 Hb_000200_290--Hb_000616_040 Hb_181600_010 Hb_181600_010 Hb_000200_290--Hb_181600_010 Hb_002835_100 Hb_002835_100 Hb_000200_290--Hb_002835_100 Hb_021443_080 Hb_021443_080 Hb_000200_290--Hb_021443_080 Hb_048476_050--Hb_181600_010 Hb_116898_010 Hb_116898_010 Hb_048476_050--Hb_116898_010 Hb_155764_010 Hb_155764_010 Hb_048476_050--Hb_155764_010 Hb_010560_040 Hb_010560_040 Hb_048476_050--Hb_010560_040 Hb_000010_470 Hb_000010_470 Hb_048476_050--Hb_000010_470 Hb_003097_210 Hb_003097_210 Hb_048476_050--Hb_003097_210 Hb_000230_380 Hb_000230_380 Hb_005000_070--Hb_000230_380 Hb_000429_170 Hb_000429_170 Hb_005000_070--Hb_000429_170 Hb_007924_020 Hb_007924_020 Hb_005000_070--Hb_007924_020 Hb_000622_040 Hb_000622_040 Hb_005000_070--Hb_000622_040 Hb_000061_300 Hb_000061_300 Hb_005000_070--Hb_000061_300 Hb_002056_060 Hb_002056_060 Hb_005000_070--Hb_002056_060 Hb_003147_050 Hb_003147_050 Hb_001538_140--Hb_003147_050 Hb_002290_040 Hb_002290_040 Hb_001538_140--Hb_002290_040 Hb_005614_050 Hb_005614_050 Hb_001538_140--Hb_005614_050 Hb_001538_140--Hb_000363_200 Hb_002078_460 Hb_002078_460 Hb_001538_140--Hb_002078_460 Hb_003226_280 Hb_003226_280 Hb_000363_200--Hb_003226_280 Hb_000865_070 Hb_000865_070 Hb_000363_200--Hb_000865_070 Hb_000363_200--Hb_003097_210 Hb_001545_060 Hb_001545_060 Hb_000363_200--Hb_001545_060 Hb_000363_200--Hb_002078_460 Hb_000363_200--Hb_116898_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27616 0.370051 0.81994 0.089767 1.31016 1.09817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.63512 4.52341 6.10699 3.05917 1.38219

CAGE analysis