Hb_000454_090

Information

Type -
Description -
Location Contig454: 77960-83240
Sequence    

Annotation

kegg
ID rcu:RCOM_0292270
description vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative
nr
ID XP_010530297.1
description PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
swissprot
ID Q96473
description V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1
trembl
ID B9RG53
description Vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative OS=Ricinus communis GN=RCOM_0292270 PE=3 SV=1
Gene Ontology
ID GO:0005774
description v-type proton atpase 16 kda proteolipid subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43342: 77968-83278
cDNA
(Sanger)
(ID:Location)		 001_E06.ab1: 78219-83274 , 014_F06.ab1: 78175-83207 , 017_E08.ab1: 78263-83274 , 022_E06.ab1: 82276-83267 , 026_C23.ab1: 78255-83208 , 046_A23.ab1: 78269-83274

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_090 0.0 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
2 Hb_000173_410 0.0406718095 - - PREDICTED: BI1-like protein [Jatropha curcas]
3 Hb_000252_100 0.0427061091 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
4 Hb_004078_040 0.0664166029 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
5 Hb_000220_100 0.0725064358 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
6 Hb_000393_020 0.072748158 - - lipid binding protein, putative [Ricinus communis]
7 Hb_005765_050 0.0728982643 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
8 Hb_007218_120 0.0748575307 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
9 Hb_002119_130 0.0755281153 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
10 Hb_003305_040 0.0761762638 - - AP47/50p mRNA family protein [Populus trichocarpa]
11 Hb_000359_060 0.0762609763 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
12 Hb_000140_380 0.0793088346 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
13 Hb_003360_040 0.0811767878 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
14 Hb_000027_260 0.0812071119 - - PREDICTED: chaperone protein dnaJ 15 [Jatropha curcas]
15 Hb_000928_070 0.0821684883 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
16 Hb_004109_220 0.0825937268 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
17 Hb_000140_090 0.0839688377 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
18 Hb_000110_140 0.0858029641 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
19 Hb_007386_040 0.0869603183 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
20 Hb_008566_030 0.0883493598 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]

Gene co-expression network

sample Hb_000454_090 Hb_000454_090 Hb_000173_410 Hb_000173_410 Hb_000454_090--Hb_000173_410 Hb_000252_100 Hb_000252_100 Hb_000454_090--Hb_000252_100 Hb_004078_040 Hb_004078_040 Hb_000454_090--Hb_004078_040 Hb_000220_100 Hb_000220_100 Hb_000454_090--Hb_000220_100 Hb_000393_020 Hb_000393_020 Hb_000454_090--Hb_000393_020 Hb_005765_050 Hb_005765_050 Hb_000454_090--Hb_005765_050 Hb_000173_410--Hb_000252_100 Hb_000173_410--Hb_000220_100 Hb_000359_060 Hb_000359_060 Hb_000173_410--Hb_000359_060 Hb_000173_410--Hb_005765_050 Hb_000173_410--Hb_004078_040 Hb_003305_040 Hb_003305_040 Hb_000252_100--Hb_003305_040 Hb_000140_380 Hb_000140_380 Hb_000252_100--Hb_000140_380 Hb_000060_050 Hb_000060_050 Hb_000252_100--Hb_000060_050 Hb_000505_150 Hb_000505_150 Hb_000252_100--Hb_000505_150 Hb_004078_040--Hb_000359_060 Hb_004078_040--Hb_000393_020 Hb_004109_220 Hb_004109_220 Hb_004078_040--Hb_004109_220 Hb_000928_070 Hb_000928_070 Hb_004078_040--Hb_000928_070 Hb_000220_100--Hb_000359_060 Hb_002045_070 Hb_002045_070 Hb_000220_100--Hb_002045_070 Hb_000608_050 Hb_000608_050 Hb_000220_100--Hb_000608_050 Hb_033594_080 Hb_033594_080 Hb_000220_100--Hb_033594_080 Hb_004117_260 Hb_004117_260 Hb_000393_020--Hb_004117_260 Hb_000349_260 Hb_000349_260 Hb_000393_020--Hb_000349_260 Hb_001300_150 Hb_001300_150 Hb_000393_020--Hb_001300_150 Hb_000393_020--Hb_000928_070 Hb_001314_070 Hb_001314_070 Hb_000393_020--Hb_001314_070 Hb_005765_050--Hb_000608_050 Hb_005765_050--Hb_001300_150 Hb_008841_020 Hb_008841_020 Hb_005765_050--Hb_008841_020 Hb_005765_050--Hb_004078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.3672 59.3163 74.028 132.842 44.5236 41.779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.5135 97.9486 145.182 79.9316 89.988

CAGE analysis