Hb_000454_110

Information

Type -
Description -
Location Contig454: 99468-103764
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17050g
description POPTRDRAFT_759753; 3-oxo-5-alpha-steroid 4-dehydrogenase family protein
nr
ID XP_011037230.1
description PREDICTED: polyprenol reductase 2-like isoform X3 [Populus euphratica]
swissprot
ID Q9SI62
description Polyprenol reductase 2 OS=Arabidopsis thaliana GN=At2g16530 PE=1 SV=2
trembl
ID B9H0Y7
description 3-oxo-5-alpha-steroid 4-dehydrogenase family protein OS=Populus trichocarpa GN=POPTR_0004s17050g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_110 0.0 - - PREDICTED: polyprenol reductase 2-like isoform X3 [Populus euphratica]
2 Hb_001723_080 0.0942991965 - - hypothetical protein L484_026139 [Morus notabilis]
3 Hb_001012_040 0.1306350196 - - PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]
4 Hb_103752_010 0.1328248101 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
5 Hb_149683_010 0.1414375666 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
6 Hb_000039_170 0.1416906859 - - protein MOTHER of FT and TF 1-like [Jatropha curcas]
7 Hb_012395_200 0.1429980492 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008705_090 0.1462093291 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
9 Hb_006816_440 0.1488722082 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_003106_140 0.1507288105 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001473_120 0.151411571 - - Uncharacterized protein isoform 1 [Theobroma cacao]
12 Hb_000078_010 0.1516843322 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
13 Hb_002471_160 0.1522006036 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4-like [Populus euphratica]
14 Hb_000444_030 0.153533992 - - PREDICTED: expansin-A20 [Jatropha curcas]
15 Hb_000684_160 0.1559652293 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
16 Hb_000300_400 0.1565713126 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
17 Hb_004206_030 0.1612594604 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
18 Hb_000184_180 0.1637202244 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
19 Hb_003349_070 0.166461301 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
20 Hb_000603_210 0.1665429376 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]

Gene co-expression network

sample Hb_000454_110 Hb_000454_110 Hb_001723_080 Hb_001723_080 Hb_000454_110--Hb_001723_080 Hb_001012_040 Hb_001012_040 Hb_000454_110--Hb_001012_040 Hb_103752_010 Hb_103752_010 Hb_000454_110--Hb_103752_010 Hb_149683_010 Hb_149683_010 Hb_000454_110--Hb_149683_010 Hb_000039_170 Hb_000039_170 Hb_000454_110--Hb_000039_170 Hb_012395_200 Hb_012395_200 Hb_000454_110--Hb_012395_200 Hb_001723_080--Hb_001012_040 Hb_000300_400 Hb_000300_400 Hb_001723_080--Hb_000300_400 Hb_008705_090 Hb_008705_090 Hb_001723_080--Hb_008705_090 Hb_001723_080--Hb_012395_200 Hb_012395_210 Hb_012395_210 Hb_001723_080--Hb_012395_210 Hb_001012_040--Hb_012395_210 Hb_004206_030 Hb_004206_030 Hb_001012_040--Hb_004206_030 Hb_005539_210 Hb_005539_210 Hb_001012_040--Hb_005539_210 Hb_001213_120 Hb_001213_120 Hb_001012_040--Hb_001213_120 Hb_005137_020 Hb_005137_020 Hb_103752_010--Hb_005137_020 Hb_103752_010--Hb_149683_010 Hb_078633_010 Hb_078633_010 Hb_103752_010--Hb_078633_010 Hb_004297_040 Hb_004297_040 Hb_103752_010--Hb_004297_040 Hb_000684_160 Hb_000684_160 Hb_103752_010--Hb_000684_160 Hb_006816_440 Hb_006816_440 Hb_103752_010--Hb_006816_440 Hb_149683_010--Hb_006816_440 Hb_002235_230 Hb_002235_230 Hb_149683_010--Hb_002235_230 Hb_000184_180 Hb_000184_180 Hb_149683_010--Hb_000184_180 Hb_000052_010 Hb_000052_010 Hb_149683_010--Hb_000052_010 Hb_149683_010--Hb_000300_400 Hb_000039_170--Hb_001723_080 Hb_000039_170--Hb_012395_200 Hb_000847_140 Hb_000847_140 Hb_000039_170--Hb_000847_140 Hb_012305_120 Hb_012305_120 Hb_000039_170--Hb_012305_120 Hb_003349_070 Hb_003349_070 Hb_000039_170--Hb_003349_070 Hb_012395_200--Hb_000684_160 Hb_001008_010 Hb_001008_010 Hb_012395_200--Hb_001008_010 Hb_000078_010 Hb_000078_010 Hb_012395_200--Hb_000078_010 Hb_007810_030 Hb_007810_030 Hb_012395_200--Hb_007810_030 Hb_074590_010 Hb_074590_010 Hb_012395_200--Hb_074590_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.280141 0.0425175 0.0190989 0.0206891 0.0765946 0.488052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05091 0.918268 0.503011 0.0925938 0

CAGE analysis