Hb_000454_130

Information

Type transcription factor
Description TF Family: BBR-BPC
Location Contig454: 120531-123864
Sequence    

Annotation

kegg
ID rcu:RCOM_1450970
description hypothetical protein
nr
ID XP_002513008.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8S8C6
description Protein BASIC PENTACYSTEINE4 OS=Arabidopsis thaliana GN=BPC4 PE=1 SV=1
trembl
ID B9RG56
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1450970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43347: 120591-123844 , PASA_asmbl_43348: 120609-123844
cDNA
(Sanger)
(ID:Location)		 028_O09.ab1: 120593-122925 , 040_A15.ab1: 120609-122827

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_130 0.0 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
2 Hb_000087_060 0.0605052135 - - protein transporter, putative [Ricinus communis]
3 Hb_001089_050 0.0692704498 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
4 Hb_003927_040 0.0707241197 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
5 Hb_002492_010 0.0712288045 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
6 Hb_001716_020 0.0742851581 - - hydrolase, putative [Ricinus communis]
7 Hb_002028_210 0.0747229687 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
8 Hb_000029_060 0.0752404628 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
9 Hb_003929_280 0.0753779439 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
10 Hb_002073_200 0.0756147781 - - Phosphatase 2A-2 [Theobroma cacao]
11 Hb_003866_080 0.0757747002 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
12 Hb_003849_110 0.0762866644 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
13 Hb_001922_150 0.0771530562 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
14 Hb_009911_030 0.0771577431 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
15 Hb_000521_330 0.0774907552 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000086_420 0.0783146759 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
17 Hb_001053_130 0.0785940257 transcription factor TF Family: mTERF hypothetical protein RCOM_1451930 [Ricinus communis]
18 Hb_004837_180 0.0800463675 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
19 Hb_000705_170 0.0809019762 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
20 Hb_005653_090 0.0811492605 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000454_130 Hb_000454_130 Hb_000087_060 Hb_000087_060 Hb_000454_130--Hb_000087_060 Hb_001089_050 Hb_001089_050 Hb_000454_130--Hb_001089_050 Hb_003927_040 Hb_003927_040 Hb_000454_130--Hb_003927_040 Hb_002492_010 Hb_002492_010 Hb_000454_130--Hb_002492_010 Hb_001716_020 Hb_001716_020 Hb_000454_130--Hb_001716_020 Hb_002028_210 Hb_002028_210 Hb_000454_130--Hb_002028_210 Hb_001205_200 Hb_001205_200 Hb_000087_060--Hb_001205_200 Hb_000087_060--Hb_002492_010 Hb_000087_060--Hb_001089_050 Hb_000358_230 Hb_000358_230 Hb_000087_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_000087_060--Hb_000076_160 Hb_003866_080 Hb_003866_080 Hb_001089_050--Hb_003866_080 Hb_000402_230 Hb_000402_230 Hb_001089_050--Hb_000402_230 Hb_000861_080 Hb_000861_080 Hb_001089_050--Hb_000861_080 Hb_001545_150 Hb_001545_150 Hb_001089_050--Hb_001545_150 Hb_004143_100 Hb_004143_100 Hb_001089_050--Hb_004143_100 Hb_001089_050--Hb_001716_020 Hb_003929_280 Hb_003929_280 Hb_003927_040--Hb_003929_280 Hb_001751_140 Hb_001751_140 Hb_003927_040--Hb_001751_140 Hb_000645_170 Hb_000645_170 Hb_003927_040--Hb_000645_170 Hb_060094_020 Hb_060094_020 Hb_003927_040--Hb_060094_020 Hb_008568_020 Hb_008568_020 Hb_003927_040--Hb_008568_020 Hb_140049_040 Hb_140049_040 Hb_003927_040--Hb_140049_040 Hb_002492_010--Hb_001716_020 Hb_001481_060 Hb_001481_060 Hb_002492_010--Hb_001481_060 Hb_004994_240 Hb_004994_240 Hb_002492_010--Hb_004994_240 Hb_002492_010--Hb_001089_050 Hb_002492_010--Hb_004143_100 Hb_001716_020--Hb_001481_060 Hb_105105_010 Hb_105105_010 Hb_001716_020--Hb_105105_010 Hb_002205_250 Hb_002205_250 Hb_001716_020--Hb_002205_250 Hb_000028_130 Hb_000028_130 Hb_001716_020--Hb_000028_130 Hb_000029_060 Hb_000029_060 Hb_001716_020--Hb_000029_060 Hb_024621_040 Hb_024621_040 Hb_002028_210--Hb_024621_040 Hb_001473_160 Hb_001473_160 Hb_002028_210--Hb_001473_160 Hb_093458_040 Hb_093458_040 Hb_002028_210--Hb_093458_040 Hb_001408_040 Hb_001408_040 Hb_002028_210--Hb_001408_040 Hb_005653_090 Hb_005653_090 Hb_002028_210--Hb_005653_090 Hb_002028_210--Hb_002492_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.1379 48.8917 36.726 36.0308 27.8175 33.9142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1403 42.5078 24.9296 26.7359 31.0326

CAGE analysis