Hb_000454_140

Information

Type transcription factor
Description TF Family: bZIP
Location Contig454: 135300-138797
Sequence    

Annotation

kegg
ID cit:102613352
description dentin sialophosphoprotein-like
nr
ID XP_012084427.1
description PREDICTED: transcription factor RF2a-like [Jatropha curcas]
swissprot
ID Q6S4P4
description Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=2
trembl
ID A0A067K743
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19634 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable transcription factor 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43351: 136135-138331 , PASA_asmbl_43352: 137845-138206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_140 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
2 Hb_000163_230 0.0672475215 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
3 Hb_007849_050 0.0750113397 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
4 Hb_000045_260 0.0804831973 - - protein with unknown function [Ricinus communis]
5 Hb_012305_140 0.0875557533 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
6 Hb_005694_130 0.0879850025 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
7 Hb_005499_010 0.0910433017 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
8 Hb_003001_070 0.0910863477 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
9 Hb_003992_180 0.0957304925 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
10 Hb_090782_010 0.09640034 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
11 Hb_000084_240 0.0986564643 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
12 Hb_002897_050 0.1028097119 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
13 Hb_001009_090 0.1035856847 - - CDK protein [Hevea brasiliensis]
14 Hb_011631_010 0.1061541517 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
15 Hb_000638_280 0.107245182 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
16 Hb_002107_060 0.1078580658 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
17 Hb_091226_010 0.1087406909 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
18 Hb_005649_090 0.1134977662 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
19 Hb_003078_030 0.1155939809 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
20 Hb_010368_080 0.1165529564 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]

Gene co-expression network

sample Hb_000454_140 Hb_000454_140 Hb_000163_230 Hb_000163_230 Hb_000454_140--Hb_000163_230 Hb_007849_050 Hb_007849_050 Hb_000454_140--Hb_007849_050 Hb_000045_260 Hb_000045_260 Hb_000454_140--Hb_000045_260 Hb_012305_140 Hb_012305_140 Hb_000454_140--Hb_012305_140 Hb_005694_130 Hb_005694_130 Hb_000454_140--Hb_005694_130 Hb_005499_010 Hb_005499_010 Hb_000454_140--Hb_005499_010 Hb_001009_090 Hb_001009_090 Hb_000163_230--Hb_001009_090 Hb_000163_230--Hb_000045_260 Hb_003078_030 Hb_003078_030 Hb_000163_230--Hb_003078_030 Hb_000671_060 Hb_000671_060 Hb_000163_230--Hb_000671_060 Hb_000186_200 Hb_000186_200 Hb_000163_230--Hb_000186_200 Hb_003001_070 Hb_003001_070 Hb_007849_050--Hb_003001_070 Hb_007849_050--Hb_012305_140 Hb_007849_050--Hb_005694_130 Hb_007849_050--Hb_000163_230 Hb_004324_060 Hb_004324_060 Hb_007849_050--Hb_004324_060 Hb_011631_010 Hb_011631_010 Hb_000045_260--Hb_011631_010 Hb_000638_280 Hb_000638_280 Hb_000045_260--Hb_000638_280 Hb_002897_050 Hb_002897_050 Hb_000045_260--Hb_002897_050 Hb_000084_240 Hb_000084_240 Hb_000045_260--Hb_000084_240 Hb_012305_140--Hb_005694_130 Hb_003992_180 Hb_003992_180 Hb_012305_140--Hb_003992_180 Hb_010368_080 Hb_010368_080 Hb_012305_140--Hb_010368_080 Hb_002609_190 Hb_002609_190 Hb_012305_140--Hb_002609_190 Hb_005694_130--Hb_003001_070 Hb_000609_110 Hb_000609_110 Hb_005694_130--Hb_000609_110 Hb_005694_130--Hb_003992_180 Hb_000805_200 Hb_000805_200 Hb_005694_130--Hb_000805_200 Hb_005499_010--Hb_000084_240 Hb_005499_010--Hb_011631_010 Hb_091226_010 Hb_091226_010 Hb_005499_010--Hb_091226_010 Hb_005499_010--Hb_000045_260 Hb_005499_010--Hb_002897_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.4283 133.345 93.7665 38.5863 22.3964 24.114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2841 12.5624 17.9444 23.5585 32.9131

CAGE analysis