Hb_000454_150

Information

Type transcription factor
Description TF Family: C3H
Location Contig454: 148318-156352
Sequence    

Annotation

kegg
ID rcu:RCOM_1451400
description tRNA-dihydrouridine synthase, putative
nr
ID XP_002513011.1
description tRNA-dihydrouridine synthase, putative [Ricinus communis]
swissprot
ID Q9T0J6
description tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Arabidopsis thaliana GN=At4g38890 PE=1 SV=2
trembl
ID B9RG59
description tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Ricinus communis GN=RCOM_1451400 PE=3 SV=1
Gene Ontology
ID GO:0003824
description trna-dihydrouridine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_150 0.0 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
2 Hb_001476_090 0.1566760349 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
3 Hb_002893_190 0.1690563456 - - unnamed protein product [Coffea canephora]
4 Hb_002217_390 0.178326182 - - PREDICTED: galactokinase [Jatropha curcas]
5 Hb_000732_180 0.1797474749 - - Uncharacterized protein TCM_030007 [Theobroma cacao]
6 Hb_002888_060 0.1836667091 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
7 Hb_031862_200 0.1877520066 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
8 Hb_000594_130 0.1892438468 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_012033_010 0.19139857 - - PREDICTED: histone H1.2-like [Jatropha curcas]
10 Hb_000776_020 0.1959561695 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
11 Hb_000418_150 0.19620354 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_005523_050 0.1967470902 - - hypothetical protein JCGZ_09175 [Jatropha curcas]
13 Hb_010490_060 0.1986617865 - - PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
14 Hb_001496_120 0.1987694028 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
15 Hb_000191_100 0.1993426484 - - cytochrome P450, putative [Ricinus communis]
16 Hb_001963_110 0.2016947256 - - -
17 Hb_001689_070 0.2021704525 - - cytochrome P450, putative [Ricinus communis]
18 Hb_046998_010 0.2046588746 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
19 Hb_064106_010 0.2053229341 - - PREDICTED: uncharacterized protein LOC104878249 [Vitis vinifera]
20 Hb_002811_020 0.2064213595 - - Cysteine synthase [Morus notabilis]

Gene co-expression network

sample Hb_000454_150 Hb_000454_150 Hb_001476_090 Hb_001476_090 Hb_000454_150--Hb_001476_090 Hb_002893_190 Hb_002893_190 Hb_000454_150--Hb_002893_190 Hb_002217_390 Hb_002217_390 Hb_000454_150--Hb_002217_390 Hb_000732_180 Hb_000732_180 Hb_000454_150--Hb_000732_180 Hb_002888_060 Hb_002888_060 Hb_000454_150--Hb_002888_060 Hb_031862_200 Hb_031862_200 Hb_000454_150--Hb_031862_200 Hb_003007_030 Hb_003007_030 Hb_001476_090--Hb_003007_030 Hb_001496_120 Hb_001496_120 Hb_001476_090--Hb_001496_120 Hb_000365_220 Hb_000365_220 Hb_001476_090--Hb_000365_220 Hb_000418_150 Hb_000418_150 Hb_001476_090--Hb_000418_150 Hb_005542_010 Hb_005542_010 Hb_001476_090--Hb_005542_010 Hb_001476_090--Hb_002888_060 Hb_003106_110 Hb_003106_110 Hb_002893_190--Hb_003106_110 Hb_015306_010 Hb_015306_010 Hb_002893_190--Hb_015306_010 Hb_001689_070 Hb_001689_070 Hb_002893_190--Hb_001689_070 Hb_006469_090 Hb_006469_090 Hb_002893_190--Hb_006469_090 Hb_012033_010 Hb_012033_010 Hb_002893_190--Hb_012033_010 Hb_002811_020 Hb_002811_020 Hb_002893_190--Hb_002811_020 Hb_001963_110 Hb_001963_110 Hb_002217_390--Hb_001963_110 Hb_001971_050 Hb_001971_050 Hb_002217_390--Hb_001971_050 Hb_001677_230 Hb_001677_230 Hb_002217_390--Hb_001677_230 Hb_000215_250 Hb_000215_250 Hb_002217_390--Hb_000215_250 Hb_003092_050 Hb_003092_050 Hb_002217_390--Hb_003092_050 Hb_025668_020 Hb_025668_020 Hb_002217_390--Hb_025668_020 Hb_142522_040 Hb_142522_040 Hb_000732_180--Hb_142522_040 Hb_001345_040 Hb_001345_040 Hb_000732_180--Hb_001345_040 Hb_116784_020 Hb_116784_020 Hb_000732_180--Hb_116784_020 Hb_006588_020 Hb_006588_020 Hb_000732_180--Hb_006588_020 Hb_001366_260 Hb_001366_260 Hb_000732_180--Hb_001366_260 Hb_002845_020 Hb_002845_020 Hb_000732_180--Hb_002845_020 Hb_002888_060--Hb_001677_230 Hb_001141_040 Hb_001141_040 Hb_002888_060--Hb_001141_040 Hb_000191_100 Hb_000191_100 Hb_002888_060--Hb_000191_100 Hb_002888_060--Hb_001496_120 Hb_002888_060--Hb_001963_110 Hb_001268_300 Hb_001268_300 Hb_002888_060--Hb_001268_300 Hb_004785_200 Hb_004785_200 Hb_031862_200--Hb_004785_200 Hb_031862_200--Hb_000191_100 Hb_016637_020 Hb_016637_020 Hb_031862_200--Hb_016637_020 Hb_001866_100 Hb_001866_100 Hb_031862_200--Hb_001866_100 Hb_007035_010 Hb_007035_010 Hb_031862_200--Hb_007035_010 Hb_003680_010 Hb_003680_010 Hb_031862_200--Hb_003680_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.157574 0.205589 0.120776 0.0445793 0.0574882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.355638 0.455876

CAGE analysis