Hb_000454_180

Information

Type -
Description -
Location Contig454: 192384-194549
Sequence    

Annotation

kegg
ID cmo:103490330
description uncharacterized LOC103490330
nr
ID XP_011037235.1
description PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A0A0K2E7
description Uncharacterized protein OS=Cucumis sativus GN=Csa_7G007920 PE=4 SV=1
Gene Ontology
ID GO:0000276
description atp synthase e chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43355: 192738-194542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_180 0.0 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
2 Hb_000599_280 0.0918578336 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
3 Hb_003057_020 0.096734852 - - 40S ribosomal protein S23, putative [Ricinus communis]
4 Hb_006588_080 0.0969429564 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
5 Hb_007313_080 0.1013176633 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
6 Hb_011377_020 0.1023750208 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
7 Hb_007120_090 0.109108632 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
8 Hb_000270_720 0.1095855665 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
9 Hb_000948_220 0.1100835284 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
10 Hb_000172_420 0.1110088768 - - 60S ribosomal protein L30, putative [Ricinus communis]
11 Hb_003020_330 0.1110298278 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
12 Hb_004735_050 0.11169935 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
13 Hb_000110_170 0.1155011972 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_004429_110 0.1178514681 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
15 Hb_004007_180 0.1181609991 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
16 Hb_120823_010 0.1238950747 - - -
17 Hb_027472_160 0.124510346 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
18 Hb_000997_120 0.1250686054 - - 40S ribosomal protein S15E [Hevea brasiliensis]
19 Hb_000062_390 0.125845037 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
20 Hb_002316_120 0.1265483697 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]

Gene co-expression network

sample Hb_000454_180 Hb_000454_180 Hb_000599_280 Hb_000599_280 Hb_000454_180--Hb_000599_280 Hb_003057_020 Hb_003057_020 Hb_000454_180--Hb_003057_020 Hb_006588_080 Hb_006588_080 Hb_000454_180--Hb_006588_080 Hb_007313_080 Hb_007313_080 Hb_000454_180--Hb_007313_080 Hb_011377_020 Hb_011377_020 Hb_000454_180--Hb_011377_020 Hb_007120_090 Hb_007120_090 Hb_000454_180--Hb_007120_090 Hb_000599_280--Hb_011377_020 Hb_000270_720 Hb_000270_720 Hb_000599_280--Hb_000270_720 Hb_004007_180 Hb_004007_180 Hb_000599_280--Hb_004007_180 Hb_002391_220 Hb_002391_220 Hb_000599_280--Hb_002391_220 Hb_000172_420 Hb_000172_420 Hb_000599_280--Hb_000172_420 Hb_002811_090 Hb_002811_090 Hb_003057_020--Hb_002811_090 Hb_000212_210 Hb_000212_210 Hb_003057_020--Hb_000212_210 Hb_027472_160 Hb_027472_160 Hb_003057_020--Hb_027472_160 Hb_001789_050 Hb_001789_050 Hb_003057_020--Hb_001789_050 Hb_003057_020--Hb_007120_090 Hb_004735_050 Hb_004735_050 Hb_006588_080--Hb_004735_050 Hb_000878_020 Hb_000878_020 Hb_006588_080--Hb_000878_020 Hb_000635_080 Hb_000635_080 Hb_006588_080--Hb_000635_080 Hb_120823_010 Hb_120823_010 Hb_006588_080--Hb_120823_010 Hb_002316_120 Hb_002316_120 Hb_006588_080--Hb_002316_120 Hb_006588_080--Hb_000172_420 Hb_000768_130 Hb_000768_130 Hb_007313_080--Hb_000768_130 Hb_003020_330 Hb_003020_330 Hb_007313_080--Hb_003020_330 Hb_002900_130 Hb_002900_130 Hb_007313_080--Hb_002900_130 Hb_154141_030 Hb_154141_030 Hb_007313_080--Hb_154141_030 Hb_007313_080--Hb_027472_160 Hb_012395_130 Hb_012395_130 Hb_011377_020--Hb_012395_130 Hb_004754_070 Hb_004754_070 Hb_011377_020--Hb_004754_070 Hb_011377_020--Hb_006588_080 Hb_001780_050 Hb_001780_050 Hb_011377_020--Hb_001780_050 Hb_011377_020--Hb_004007_180 Hb_000997_120 Hb_000997_120 Hb_007120_090--Hb_000997_120 Hb_007120_090--Hb_001789_050 Hb_002838_030 Hb_002838_030 Hb_007120_090--Hb_002838_030 Hb_000948_220 Hb_000948_220 Hb_007120_090--Hb_000948_220 Hb_000676_160 Hb_000676_160 Hb_007120_090--Hb_000676_160 Hb_007120_090--Hb_012395_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.7647 18.0986 51.9923 90.4921 23.2565 40.0049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
226.076 490.385 71.7211 71.4611 47.5008

CAGE analysis