Hb_000454_190

Information

Type -
Description -
Location Contig454: 195625-198502
Sequence    

Annotation

kegg
ID rcu:RCOM_1451430
description Ribosome-binding factor A, putative
nr
ID XP_012084421.1
description PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
swissprot
ID O65693
description Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana GN=At4g34730 PE=2 SV=2
trembl
ID A0A067K5U5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19630 PE=3 SV=1
Gene Ontology
ID GO:0009507
description probable ribosome-binding factor chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43356: 195803-198344
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_190 0.0 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
2 Hb_005527_030 0.1356987081 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
3 Hb_000958_070 0.1366900245 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
4 Hb_011344_020 0.1371169859 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
5 Hb_000343_110 0.1371244634 - - Heat shock 70 kDa protein, putative [Ricinus communis]
6 Hb_000982_050 0.1446593681 - - PREDICTED: uncharacterized protein LOC105643124 isoform X1 [Jatropha curcas]
7 Hb_006445_010 0.1487940311 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
8 Hb_019516_030 0.1523855739 - - Calcyclin-binding protein, putative [Ricinus communis]
9 Hb_000286_170 0.1530232064 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
10 Hb_000260_560 0.1538237906 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
11 Hb_000057_050 0.1539637852 - - hypothetical protein Csa_7G132920 [Cucumis sativus]
12 Hb_000215_220 0.1544891082 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
13 Hb_006052_030 0.1555730934 - - PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
14 Hb_008595_010 0.1592819701 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
15 Hb_000441_180 0.1607393861 - - Early endosome antigen, putative [Ricinus communis]
16 Hb_000011_210 0.1627570459 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
17 Hb_000062_110 0.1648133118 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
18 Hb_023278_010 0.165572083 - - Chaperone protein DnaJ [Glycine soja]
19 Hb_000037_110 0.1660279629 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
20 Hb_000069_320 0.16604889 - - PREDICTED: uncharacterized protein LOC105642846 [Jatropha curcas]

Gene co-expression network

sample Hb_000454_190 Hb_000454_190 Hb_005527_030 Hb_005527_030 Hb_000454_190--Hb_005527_030 Hb_000958_070 Hb_000958_070 Hb_000454_190--Hb_000958_070 Hb_011344_020 Hb_011344_020 Hb_000454_190--Hb_011344_020 Hb_000343_110 Hb_000343_110 Hb_000454_190--Hb_000343_110 Hb_000982_050 Hb_000982_050 Hb_000454_190--Hb_000982_050 Hb_006445_010 Hb_006445_010 Hb_000454_190--Hb_006445_010 Hb_008595_010 Hb_008595_010 Hb_005527_030--Hb_008595_010 Hb_000347_570 Hb_000347_570 Hb_005527_030--Hb_000347_570 Hb_000170_190 Hb_000170_190 Hb_005527_030--Hb_000170_190 Hb_011512_060 Hb_011512_060 Hb_005527_030--Hb_011512_060 Hb_000037_110 Hb_000037_110 Hb_005527_030--Hb_000037_110 Hb_000010_180 Hb_000010_180 Hb_005527_030--Hb_000010_180 Hb_000260_560 Hb_000260_560 Hb_000958_070--Hb_000260_560 Hb_000958_070--Hb_011344_020 Hb_004631_150 Hb_004631_150 Hb_000958_070--Hb_004631_150 Hb_002233_130 Hb_002233_130 Hb_000958_070--Hb_002233_130 Hb_162275_040 Hb_162275_040 Hb_000958_070--Hb_162275_040 Hb_006355_020 Hb_006355_020 Hb_000958_070--Hb_006355_020 Hb_089140_050 Hb_089140_050 Hb_011344_020--Hb_089140_050 Hb_011344_020--Hb_000343_110 Hb_003884_030 Hb_003884_030 Hb_011344_020--Hb_003884_030 Hb_000376_060 Hb_000376_060 Hb_011344_020--Hb_000376_060 Hb_000429_220 Hb_000429_220 Hb_011344_020--Hb_000429_220 Hb_000573_060 Hb_000573_060 Hb_000343_110--Hb_000573_060 Hb_002044_170 Hb_002044_170 Hb_000343_110--Hb_002044_170 Hb_128743_010 Hb_128743_010 Hb_000343_110--Hb_128743_010 Hb_158604_010 Hb_158604_010 Hb_000343_110--Hb_158604_010 Hb_032920_130 Hb_032920_130 Hb_000343_110--Hb_032920_130 Hb_005365_020 Hb_005365_020 Hb_000982_050--Hb_005365_020 Hb_144166_010 Hb_144166_010 Hb_000982_050--Hb_144166_010 Hb_000215_220 Hb_000215_220 Hb_000982_050--Hb_000215_220 Hb_000085_150 Hb_000085_150 Hb_000982_050--Hb_000085_150 Hb_007426_150 Hb_007426_150 Hb_000982_050--Hb_007426_150 Hb_001104_160 Hb_001104_160 Hb_000982_050--Hb_001104_160 Hb_000544_010 Hb_000544_010 Hb_006445_010--Hb_000544_010 Hb_002749_110 Hb_002749_110 Hb_006445_010--Hb_002749_110 Hb_006445_010--Hb_007426_150 Hb_006445_010--Hb_000429_220 Hb_000152_260 Hb_000152_260 Hb_006445_010--Hb_000152_260 Hb_028308_010 Hb_028308_010 Hb_006445_010--Hb_028308_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47683 5.02662 4.25615 3.85638 16.0212 7.89741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.37553 1.8241 2.42479 3.21631 8.94191

CAGE analysis