Hb_000454_200

Information

Type -
Description -
Location Contig454: 213896-217321
Sequence    

Annotation

kegg
ID pop:POPTR_0009s12880g
description POPTRDRAFT_767344; hypothetical protein
nr
ID XP_012084420.1
description PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
swissprot
ID Q9LTV3
description Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana GN=SAUR72 PE=2 SV=1
trembl
ID A0A067K737
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19629 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43357: 216916-217484
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_200 0.0 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
2 Hb_002450_180 0.0807292325 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000847_050 0.0849525452 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
4 Hb_003376_300 0.0903343554 - - Aquaporin PIP2.2, putative [Ricinus communis]
5 Hb_005679_120 0.1003931522 - - hypothetical protein RCOM_0284080 [Ricinus communis]
6 Hb_000411_050 0.1078322102 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
7 Hb_001856_160 0.1123501157 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007625_030 0.1128798176 - - unknown [Medicago truncatula]
9 Hb_009627_020 0.1166264041 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
10 Hb_002236_010 0.1242096677 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
11 Hb_000479_230 0.1248805481 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
12 Hb_006634_090 0.1299560887 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
13 Hb_005087_030 0.1306410532 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
14 Hb_001048_070 0.1314897309 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
15 Hb_023956_010 0.1318202661 - - glutathione s-transferase, putative [Ricinus communis]
16 Hb_004659_100 0.1321138641 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006153_130 0.1325446138 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_008959_050 0.1344998317 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
19 Hb_002553_070 0.1356072608 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
20 Hb_003579_040 0.1357205857 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]

Gene co-expression network

sample Hb_000454_200 Hb_000454_200 Hb_002450_180 Hb_002450_180 Hb_000454_200--Hb_002450_180 Hb_000847_050 Hb_000847_050 Hb_000454_200--Hb_000847_050 Hb_003376_300 Hb_003376_300 Hb_000454_200--Hb_003376_300 Hb_005679_120 Hb_005679_120 Hb_000454_200--Hb_005679_120 Hb_000411_050 Hb_000411_050 Hb_000454_200--Hb_000411_050 Hb_001856_160 Hb_001856_160 Hb_000454_200--Hb_001856_160 Hb_002450_180--Hb_000411_050 Hb_002450_180--Hb_000847_050 Hb_000946_050 Hb_000946_050 Hb_002450_180--Hb_000946_050 Hb_006634_090 Hb_006634_090 Hb_002450_180--Hb_006634_090 Hb_002450_180--Hb_003376_300 Hb_000847_050--Hb_000411_050 Hb_006934_020 Hb_006934_020 Hb_000847_050--Hb_006934_020 Hb_000847_050--Hb_006634_090 Hb_000497_100 Hb_000497_100 Hb_000847_050--Hb_000497_100 Hb_005087_030 Hb_005087_030 Hb_003376_300--Hb_005087_030 Hb_002028_160 Hb_002028_160 Hb_003376_300--Hb_002028_160 Hb_166009_010 Hb_166009_010 Hb_003376_300--Hb_166009_010 Hb_003376_300--Hb_001856_160 Hb_002236_010 Hb_002236_010 Hb_005679_120--Hb_002236_010 Hb_000479_230 Hb_000479_230 Hb_005679_120--Hb_000479_230 Hb_009627_020 Hb_009627_020 Hb_005679_120--Hb_009627_020 Hb_002553_070 Hb_002553_070 Hb_005679_120--Hb_002553_070 Hb_023956_010 Hb_023956_010 Hb_005679_120--Hb_023956_010 Hb_002078_250 Hb_002078_250 Hb_000411_050--Hb_002078_250 Hb_004544_090 Hb_004544_090 Hb_000411_050--Hb_004544_090 Hb_000679_260 Hb_000679_260 Hb_000411_050--Hb_000679_260 Hb_001799_090 Hb_001799_090 Hb_001856_160--Hb_001799_090 Hb_006153_130 Hb_006153_130 Hb_001856_160--Hb_006153_130 Hb_002289_110 Hb_002289_110 Hb_001856_160--Hb_002289_110 Hb_005489_120 Hb_005489_120 Hb_001856_160--Hb_005489_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0411092 1.9601 1.42765 2.76649 0.0386064 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.20678 0.58338

CAGE analysis