Hb_000455_070

Information

Type -
Description -
Location Contig455: 98315-102482
Sequence    

Annotation

kegg
ID pmum:103329306
description carboxymethylenebutenolidase homolog
nr
ID XP_012087598.1
description PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
swissprot
ID P46209
description Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1
trembl
ID M5X621
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009589mg PE=4 SV=1
Gene Ontology
ID GO:0005829
description carboxymethylenebutenolidase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43410: 98516-102662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000455_070 0.0 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
2 Hb_003470_110 0.1341925416 - - unnamed protein product [Vitis vinifera]
3 Hb_005539_140 0.1358900126 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
4 Hb_030565_100 0.1403458571 - - serine hydroxymethyltransferase, putative [Ricinus communis]
5 Hb_002110_290 0.1453334428 - - ring finger protein, putative [Ricinus communis]
6 Hb_000236_180 0.1489046538 - - serine hydroxymethyltransferase, putative [Ricinus communis]
7 Hb_001195_090 0.1541731683 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
8 Hb_000236_190 0.1546276968 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
9 Hb_001186_110 0.156193025 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
10 Hb_000300_230 0.1564940342 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
11 Hb_000054_010 0.1595790071 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_026527_010 0.1596793631 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
13 Hb_096499_010 0.160427108 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
14 Hb_000030_130 0.1612294936 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_000246_130 0.1615815259 - - tubulin alpha chain, putative [Ricinus communis]
16 Hb_009674_010 0.1630176626 - - AAEL007687-PA [Aedes aegypti]
17 Hb_010883_180 0.1645528865 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
18 Hb_005489_150 0.1650793666 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
19 Hb_174541_030 0.1659454992 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
20 Hb_003207_150 0.1666473777 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]

Gene co-expression network

sample Hb_000455_070 Hb_000455_070 Hb_003470_110 Hb_003470_110 Hb_000455_070--Hb_003470_110 Hb_005539_140 Hb_005539_140 Hb_000455_070--Hb_005539_140 Hb_030565_100 Hb_030565_100 Hb_000455_070--Hb_030565_100 Hb_002110_290 Hb_002110_290 Hb_000455_070--Hb_002110_290 Hb_000236_180 Hb_000236_180 Hb_000455_070--Hb_000236_180 Hb_001195_090 Hb_001195_090 Hb_000455_070--Hb_001195_090 Hb_031089_020 Hb_031089_020 Hb_003470_110--Hb_031089_020 Hb_003470_110--Hb_000236_180 Hb_098795_030 Hb_098795_030 Hb_003470_110--Hb_098795_030 Hb_006615_230 Hb_006615_230 Hb_003470_110--Hb_006615_230 Hb_084147_010 Hb_084147_010 Hb_003470_110--Hb_084147_010 Hb_003470_110--Hb_030565_100 Hb_005489_150 Hb_005489_150 Hb_005539_140--Hb_005489_150 Hb_000479_060 Hb_000479_060 Hb_005539_140--Hb_000479_060 Hb_030565_050 Hb_030565_050 Hb_005539_140--Hb_030565_050 Hb_000030_130 Hb_000030_130 Hb_005539_140--Hb_000030_130 Hb_000109_190 Hb_000109_190 Hb_005539_140--Hb_000109_190 Hb_000077_100 Hb_000077_100 Hb_030565_100--Hb_000077_100 Hb_029223_040 Hb_029223_040 Hb_030565_100--Hb_029223_040 Hb_030565_100--Hb_000236_180 Hb_174541_030 Hb_174541_030 Hb_030565_100--Hb_174541_030 Hb_000297_140 Hb_000297_140 Hb_030565_100--Hb_000297_140 Hb_001186_110 Hb_001186_110 Hb_002110_290--Hb_001186_110 Hb_000300_420 Hb_000300_420 Hb_002110_290--Hb_000300_420 Hb_002909_110 Hb_002909_110 Hb_002110_290--Hb_002909_110 Hb_003185_070 Hb_003185_070 Hb_002110_290--Hb_003185_070 Hb_000054_010 Hb_000054_010 Hb_002110_290--Hb_000054_010 Hb_000580_110 Hb_000580_110 Hb_000236_180--Hb_000580_110 Hb_000417_380 Hb_000417_380 Hb_000236_180--Hb_000417_380 Hb_000236_180--Hb_006615_230 Hb_000236_180--Hb_000077_100 Hb_002129_020 Hb_002129_020 Hb_001195_090--Hb_002129_020 Hb_028639_030 Hb_028639_030 Hb_001195_090--Hb_028639_030 Hb_001216_110 Hb_001216_110 Hb_001195_090--Hb_001216_110 Hb_002596_080 Hb_002596_080 Hb_001195_090--Hb_002596_080 Hb_000684_310 Hb_000684_310 Hb_001195_090--Hb_000684_310 Hb_001493_060 Hb_001493_060 Hb_001195_090--Hb_001493_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4726 64.0052 39.3466 438.064 12.1661 18.241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.9174 17.9884 26.6131 59.2093 115.171

CAGE analysis